Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele12g0554 ATGCCCTTGGGGCCGCACCACCATCAACCACCACCAGCAACAGCTCTACAGCCACCAACACAGGCACAAGCTGGAAATGACCCACTGAAGGTGGCTGCTCGCCGTGGCTCCGATATGGAGACCGATAAGGACATGTCAGCTACTGTTGTCGAGGGGAATGATGCAGTCACTGGCCACATAATATCCACCACAATTGGAGGCAAAAGTGGGGAACCTAAACAGACCATCAGTTACATGGCAGAACGTGTTGTTGGCACCGGATCATTTGGAATTGTTTTCCAGGCAAAGTGCTTGGAGACTGGGGAAACAGTGGCTATAAAGAAGGTTTTGCAGGACAGGCGGTACAAGAATCGTGAACTGCAGTTAATGCGTTTGATGGATCATCCAAATGTAATTTCTCTGAAGCACTGTTTCTTCTCTACAACTAGCAGAGATGAACTTTTTCTGAACTTGGTTATGGAATATGTACCTGAGACAATGTATCGAGTTCTAAACCACTACAGTAGTATGAACCAGAGGATGCCCCTCATCTATGTGAAACTTTACACTTACCAAATCTTTAGGGGACTGGCATATATCCATACTGTACCTGAAGTTTGCCATAGGGATGTGAAGCCTCAAAATCTTTTGGTTGATCCTCTCACACACCAAGTGAAGCTTTGTGATTTTGGGAGTGCAAAAGTTTTGGTAAAGGGTGAATTAAACATTTCCTACATATGTTCACGTTACTATCGTGCTCCAGAACTAATATTTGGTGCGACAGAATATACAACTTCAATTGATATCTGGTCAGCTGGTTGTGTCCTTGCTGAGCTTCTTCTAGGCGAGCCCTTATTTCCAGGAGAAAATCAGGTGGACCTACTTGTGGAAATCATCAAGGTTCTTGGTACCCCGACTCGAGAAGAAATTCGTTGCATGAACCCAAATTATACTGATTTTAGATTTCCACAGATTAAAGCTCGCCCCTGGCACAAGGTTTTTCATAAGCGAATGCCTCCTGAAGCGATTGACCTTACTTCAAGGCTTCTTCAATATTCACCTAGTCTACGATGTATTGCGCTGGAAGCGTGTGCACATCCTTTCTTTGACGAGCTTCGTGAACCTAATGCCCGACTACCTAATGGCCGCCCACTGCCCCCGCTTTTCAACTTTAAACAGGAACTGTCCGGAGCATCGCCTGAATTGATCAGTAAGCTCATCCCAGAGCATGTTAGGCGGCAGAGCATTCTGGGCTTCCAGATTCAACCTGGTACATAG 1257 0.4566 MPLGPHHHQPPPATALQPPTQAQAGNDPLKVAARRGSDMETDKDMSATVVEGNDAVTGHIISTTIGGKSGEPKQTISYMAERVVGTGSFGIVFQAKCLETGETVAIKKVLQDRRYKNRELQLMRLMDHPNVISLKHCFFSTTSRDELFLNLVMEYVPETMYRVLNHYSSMNQRMPLIYVKLYTYQIFRGLAYIHTVPEVCHRDVKPQNLLVDPLTHQVKLCDFGSAKVLVKGELNISYICSRYYRAPELIFGATEYTTSIDIWSAGCVLAELLLGEPLFPGENQVDLLVEIIKVLGTPTREEIRCMNPNYTDFRFPQIKARPWHKVFHKRMPPEAIDLTSRLLQYSPSLRCIALEACAHPFFDELREPNARLPNGRPLPPLFNFKQELSGASPELISKLIPEHVRRQSILGFQIQPGT 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele12g0554 418 MobiDBLite consensus disorder prediction 1 25 - -
Lele12g0554 418 Gene3D Transferase(Phosphotransferase) domain 1 158 405 - -
Lele12g0554 418 ProSitePatterns Protein kinases ATP-binding region signature. 84 108 IPR017441 GO:0005524
Lele12g0554 418 PANTHER GLYCOGEN SYNTHASE KINASE-3 ALPHA 42 407 - -
Lele12g0554 418 SUPERFAMILY Protein kinase-like (PK-like) 77 389 IPR011009 -
Lele12g0554 418 CDD STKc_GSK3 73 365 IPR039192 -
Lele12g0554 418 Gene3D Phosphorylase Kinase; domain 1 63 157 - -
Lele12g0554 418 SMART serkin_6 78 362 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele12g0554 418 ProSitePatterns Serine/Threonine protein kinases active-site signature. 199 211 IPR008271 GO:0004672|GO:0006468
Lele12g0554 418 Pfam Protein kinase domain 78 362 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele12g0554 418 FunFam Glycogen synthase kinase-3 beta 62 157 - -
Lele12g0554 418 MobiDBLite consensus disorder prediction 1 17 - -
Lele12g0554 418 ProSiteProfiles Protein kinase domain profile. 78 362 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele12g0554 418 FunFam Shaggy-related protein kinase kappa 158 405 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele12g0554 Lele-ChrLele12 13872511 13877172 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele12g0554 82 400 MAP Kinase Gene Family AT3G59790 35.329 4.46e-56 188
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_GSK Lele12g0554 Pkinase 8.5e-61 CL0016