Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele12g0549 ATGAGAGAACGAACAGCGAGTGTTAGGCAATACGTGAGGTCCAAAATGCCAAGGCTTCGTTGGACTCCTGATCTCCACCTTGCTTTTGTTCTTGCTGTTGAGAGGCTTGGTGGACAAGAAAGAGCAACTCCCAAGTTGGTTCTTCAGCTGATGAATGTGAGAGGACTTAGTATTGCACATGTAAAAAGTCATTTGCAGATGTATCGAAGTAAAAAGCTTGATGAGTCTGGCCAAGTGTTATCTCATCGAAATAGGGGAATGCAAGGAAGAGTACACATTGCGGAGATGTACGAAAGATATAATAAAGGGCAAGGCCACTTTGGGATACATAACAGAAACTATCAACGGTCATCCGAGTTCATGAAACATCCGTATGACTTCAAAGCCCCAGAATCTTCAAGGTTTCAGCCATATGGGATGGTGAATAACCAGTGGAGCAATATGAACAAGATAGGGAAATCGCACCTATTTGATGTAAGAGATGCAATAACAAGAAGTGGATCTATTGGATGCAGAGAATTTATCCAAGAAAAGAGATGGCCTCATGCTGAAATACAAGTCAATAACAAACCTAGGATTTCTTGGGACGACAAGTATAATAATAATAATAATAATTCCCCTCTTTGGAGAACCAAAGCTAGTTCTACAGCTCCTGTCTTTTCGTCGACTCACGCTCAATTCCATGCTAAGGTTAATGATATAAAAGATGGAATCATCAGGTGTATAAATGAGGAGGAGCTATCGCGAGCAGGGGGTGAGGTGAAAGCCCAATCCGAGAGGTTGAAGGAGAAGAAAGGGTCAAGTTTCTTAGAGTTGAGTTTAAGCCATGATTTTGGAAACGTTAGAGAAGGGAAGAACAACGTCTCATGTCCAGAAAATAACGATCGAGTTAATACGAAGCTTTCTCTTTCGTTGCTGTGA 921 0.4159 MRERTASVRQYVRSKMPRLRWTPDLHLAFVLAVERLGGQERATPKLVLQLMNVRGLSIAHVKSHLQMYRSKKLDESGQVLSHRNRGMQGRVHIAEMYERYNKGQGHFGIHNRNYQRSSEFMKHPYDFKAPESSRFQPYGMVNNQWSNMNKIGKSHLFDVRDAITRSGSIGCREFIQEKRWPHAEIQVNNKPRISWDDKYNNNNNNSPLWRTKASSTAPVFSSTHAQFHAKVNDIKDGIIRCINEEELSRAGGEVKAQSERLKEKKGSSFLELSLSHDFGNVREGKNNVSCPENNDRVNTKLSLSLL 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele12g0549 306 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 13 73 IPR017930 -
Lele12g0549 306 Gene3D - 16 73 - -
Lele12g0549 306 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 17 72 IPR006447 GO:0003677
Lele12g0549 306 Pfam Myb-like DNA-binding domain 19 69 IPR001005 -
Lele12g0549 306 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 6 128 - -
Lele12g0549 306 SUPERFAMILY Homeodomain-like 15 71 IPR009057 -
Lele12g0549 306 FunFam Myb family transcription factor 15 73 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele12g0549 Lele-ChrLele12 13824618 13826948 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele12g0549 5 78 G2-like Transcription Factor Family AT2G42660 77.027 8.34e-35 125
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Lele12g0549 Myb_DNA-binding 1.8e-06 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele12g0549 12 13824618 13826948 Lele29g0628 29 3823378 3837244 CCT
Lele12g0549 12 13824618 13826948 Lele30g0770 30 12084090 12089488 CCT
Lele12g0549 12 13824618 13826948 Lele31g0914 31 16561967 16567687 CCT
Lele12g0549 12 13824618 13826948 Lele32g0612 32 3772810 3778581 CCT
Lele12g0549 12 13824618 13826948 Lele12g0549 12 13824618 13826948 ECH
Lele09g0790 09 6232479 6236721 Lele12g0549 12 13824618 13826948 hybridization
Lele10g0718 10 5470310 5472055 Lele12g0549 12 13824618 13826948 hybridization