Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele12g0543 ATGGACTCCCTCGCGGGAGCTCCGTCGCCCCCCTCCACTGCTCCGTCCCGGTCGTCGCCGTTTCCCGGACGGGAGGACTGCTGGAGTGAGGACGCCACCTTCACTCTCATCGATGCTTGGGGTGAACGTCACCTTGAGCTTAATCGAGGAAACCTCCGCCAGAAGCACTGGCAAGGGGTCGCCGACGCCGTTAACGCCAATCATGGCCACTTGAAGAAGGCGCGCCGAACCGACGTCCAGTGCAAGAACCGCATCGACACTCTGAAGAAGAAGTACAAGATCGAGAAGAACAAGGTCATGGATTTCAACGGGAACTACACTAGCCCTTGGCCCTTCTTCGCCCGCCTTGACGCTCTCATCGGCGATGTGTTTCCAGTTAAGAGACTTCCGCCGGCGATCGACAGTAACCGCAGTAGCTCCCCTCCCTCGAAGTCTCCGGCATGGGTAATCTCACAGGTTCCTGTCGGCCGCCGATCCGGCACTCAGAAACGGCCGGCGCTACCGGCGCCGGCGCCGTCGAGCATGAAAGATTCGTCTTTCCGTCGGAACTTCTCAGCTTTCGCAGCGGCAGCTGCAGCAGCATCCGAGGCAGGGGATGCAAGTAGTGACGATTCGGATGAGTCAAGGTCAAGTAGTGCCACCGGAAGTAGAAAGAGAGGAAGAGAAAGAGAGAAAAAGAGGGAAAACGATGGGCATTCAGAATTTGGGTACAGAGAACTGGCACAAGCAATAGAGAGGTTCGGGGAGATATACGAGAGAGTAGAGGCGGCGAAGCAAAGGCAAATGGTGGAGTTAGAGAAACAGAGAATGCAATTTGCTAAGGATTTGGAGTACCAGAGGATGGAGCTTTTCATGAAAACACATGTTCAGCTTCAAAAAATCAAGCGCACCAAGCGATCTTCTCAGGGCTGTTCAGACCACATTAAATTTGGCTTGAATTTGATGCTTGAACTTTGTTTGTGGTTTGCGATGAACCACAAGCGAAATAAGAATTCTTCAGTAACTTTATGTAATTTGTACTTGTATAGGGAAGAAAATGGGAACTTGATAACAGTATCATTTTTGTGTATGCGTTCATTTGGGAATTACTCAAGTTAG 1098 0.5164 MDSLAGAPSPPSTAPSRSSPFPGREDCWSEDATFTLIDAWGERHLELNRGNLRQKHWQGVADAVNANHGHLKKARRTDVQCKNRIDTLKKKYKIEKNKVMDFNGNYTSPWPFFARLDALIGDVFPVKRLPPAIDSNRSSSPPSKSPAWVISQVPVGRRSGTQKRPALPAPAPSSMKDSSFRRNFSAFAAAAAAASEAGDASSDDSDESRSSSATGSRKRGREREKKRENDGHSEFGYRELAQAIERFGEIYERVEAAKQRQMVELEKQRMQFAKDLEYQRMELFMKTHVQLQKIKRTKRSSQGCSDHIKFGLNLMLELCLWFAMNHKRNKNSSVTLCNLYLYREENGNLITVSFLCMRSFGNYSS 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele12g0543 365 MobiDBLite consensus disorder prediction 153 178 - -
Lele12g0543 365 MobiDBLite consensus disorder prediction 1 24 - -
Lele12g0543 365 MobiDBLite consensus disorder prediction 202 234 - -
Lele12g0543 365 Coils Coil 251 271 - -
Lele12g0543 365 PANTHER TRIHELIX TRANSCRIPTION FACTOR ASIL2 9 299 IPR044823 -
Lele12g0543 365 Gene3D - 28 94 - -
Lele12g0543 365 MobiDBLite consensus disorder prediction 195 234 - -
Lele12g0543 365 FunFam trihelix transcription factor ASIL2 28 94 - -
Lele12g0543 365 Pfam Myb/SANT-like DNA-binding domain 25 119 IPR044822 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele12g0543 Lele-ChrLele12 13761516 13762717 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele12g0543 190 307 Trihelix Transcription Factor Family AT3G14180 41.667 2.86e-18 84.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Lele12g0543 Myb_DNA-bind_4 7.2e-24 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele12g0543 12 13761516 13762717 Lele12g0543 12 13761516 13762717 ECH
Lele09g0794 09 6280855 6284894 Lele12g0543 12 13761516 13762717 hybridization
Lele10g0722 10 5519419 5520611 Lele12g0543 12 13761516 13762717 hybridization