Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele12g0538 ATGTCGCAATCTGGGAAGTCTGTGCGAGAACTTGGCTATGACTCTATTGCGACTCGATTCGGGGATTCGCTGACTTGTGAAGAGAACAAGCCCGATTTCAAAGAACTCGATCTGGGTTCGTTCGTTTCGCCATTGAAAATCCGCGGCGCAGGTAATGCTTCCTGCGGCAATGGAGCTGCTGCCACTTCGAGCTCGAGCTCGAGCTCGAGCTCCTCCGGCTCTGTCACAGGCAGAAGCAGCGTTCCCAAGTTGCCCAGAAGACCCGACGGAAAACCAAACCACCATTCCGGCGAGCTCACTGGCTATTTCGATACCAGCCCGAATGCCTCGGAGGGCCTCCGATCCGCTTCGGCAACAAGCAATTCCAAGCCGGGTCATCGGAGATCGGTTTCGGCTGGAGCCCCATTAATATACTCCGGCGGAACTCATAGCAGCCCGGGGAGTAATAATTGCTCGAACAGTGCAACTTCAGGGACCAATTTATTCCCAACTGGTAATATTTGTCCTTCCGGGAAGATCCTCAAATCGGGTATGGTGTCTCGAGCTTCTAATAGAACTGATGTATTGGGTTCTGGAACGGCAAACTATGGCCATGGTAATATAATGCGTGCTAGCTCGAAATTGAGCATTTCTGGGCAAGTCGTGGATGACAGTGGGGCTGGGAATCCTCAGCTTGGTGGAGCATCGGGGTCCGTCAGACCAGCAATGAGTGGTTCTGATCCGGAAGAGATGAAGAAGACTGGGAATGCGTTATATAGAAGCGGTAATTTTGTGGAGGCATTGTCATTGTACGATCGTGCTATTTCGATATCGCCAAATAATGCAGCCTACCGGAGTAACCGGGCAGCGGCGTTAACGGCGTTGGGGAGAGTGGCTGAGGCAGCGAAGGAGTGTGAAGAGGCTGTGAAGTTGGACCCTAATTATGTCCGGGCACATCAGAGGCTGGCTTCTCTTTGCCTGCGCTTTGGATGTGTCGAAAGCGCCAAGCGCCACCTCTATCTCCCTGGACAACTCGTGGAGCAATCTGAACTGCAGAAGCTGAGGTTATTGGAGAAACATATAAACCAATGTGCAGCGGCAAGGAAGATTGGCGATTGGAAGATTGCACTTGGGGAATCCAATGCAGCCATTGCAGTTGGAGCAGATTTCTCACCTGAGCTTGTTGCTTGTAAAGTGGAAGCTTATTTAAAACTCCATCAACTTGAGGATGCTGAATCCAGTCTCTCAAACATACCAAAGTTGGAAGGTTGTCCTTTATCCTGCTCTCAAACCAAGTTCTTTGGTATGGCTGGTGAAGCCTATGTGCACTTGGTTCATGCTCAGGTTCAGATGGCCATGGGAAGATTTGAGAATGCGGTAGCATCAGCCGAAAAGGCTAGACTGTCAGATTACAACAATGTAGAAGTTGAGAAGATTCTAAATACTGTGAAAATGGTAGCTAGAGCTCGCTCAAAGGGCAACGATCACTTTAGCTCCGGCAAATTTTCTGAAGCTTGTTCTGCTTATGGTGAAGGCCTCAAATATGATAGCTGCAACTACGTTCTTTACTGTAATAGAGCTGTTTGTTGGTCTAAACTAGGACTGTGGGAAAAATCTGTTGAGGATTGTAACCAAGCTCTCAACATTAAACCAAATTACACCAAGGCCCTCTTTCGCAGGGCTGCATCAAATGCAAAGCTTGAAAGATGGGCTGAAGTTGTGAAAGATTATGAGACCTTAAAACAAGAACTCCCAGGAGACAATGAAGTTGTTGAATCCCTTCGTAAGGCTCAGCTAGCTTTAATAAAATCTCGTGGAGAGGACCATGCTGGAAAGCTTGAAGTTGAAGTCGGAGCTGTCTCTTCGTTGGATGAATTTAAAGCTGCTATTGCTTCTGCTGGTATCTCAGTGGTTCATTTCAAAGAGGCATCAGATGAACTATGCGGAGAAATATCCCCATTCATAAATATGCTGTGCGTCAGATACCCATCTGTTAAATTTATCAAGGTCGATGTGGAGGCGTGTTTAACTATAGCAAGAGCTGAGAGCATAAGAACTGTGCCAACGTTCAAAATTTATAAAAATGGAACGAAGGTGAAGGAGATGATTCGGCCAACGCTTAAGTTCTTAGAGGAGTCAGTAAGAAGCTGTAGTTCCCTCTGA 2142 0.4753 MSQSGKSVRELGYDSIATRFGDSLTCEENKPDFKELDLGSFVSPLKIRGAGNASCGNGAAATSSSSSSSSSSGSVTGRSSVPKLPRRPDGKPNHHSGELTGYFDTSPNASEGLRSASATSNSKPGHRRSVSAGAPLIYSGGTHSSPGSNNCSNSATSGTNLFPTGNICPSGKILKSGMVSRASNRTDVLGSGTANYGHGNIMRASSKLSISGQVVDDSGAGNPQLGGASGSVRPAMSGSDPEEMKKTGNALYRSGNFVEALSLYDRAISISPNNAAYRSNRAAALTALGRVAEAAKECEEAVKLDPNYVRAHQRLASLCLRFGCVESAKRHLYLPGQLVEQSELQKLRLLEKHINQCAAARKIGDWKIALGESNAAIAVGADFSPELVACKVEAYLKLHQLEDAESSLSNIPKLEGCPLSCSQTKFFGMAGEAYVHLVHAQVQMAMGRFENAVASAEKARLSDYNNVEVEKILNTVKMVARARSKGNDHFSSGKFSEACSAYGEGLKYDSCNYVLYCNRAVCWSKLGLWEKSVEDCNQALNIKPNYTKALFRRAASNAKLERWAEVVKDYETLKQELPGDNEVVESLRKAQLALIKSRGEDHAGKLEVEVGAVSSLDEFKAAIASAGISVVHFKEASDELCGEISPFINMLCVRYPSVKFIKVDVEACLTIARAESIRTVPTFKIYKNGTKVKEMIRPTLKFLEESVRSCSSL 713
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele12g0538 713 SMART tpr_5 433 466 IPR019734 GO:0005515
Lele12g0538 713 SMART tpr_5 513 546 IPR019734 GO:0005515
Lele12g0538 713 SMART tpr_5 241 274 IPR019734 GO:0005515
Lele12g0538 713 SMART tpr_5 547 580 IPR019734 GO:0005515
Lele12g0538 713 SMART tpr_5 275 308 IPR019734 GO:0005515
Lele12g0538 713 PANTHER TPR REPEAT-CONTAINING THIOREDOXIN 22 708 IPR044534 -
Lele12g0538 713 Gene3D Tetratricopeptide repeat domain 239 598 IPR011990 GO:0005515
Lele12g0538 713 MobiDBLite consensus disorder prediction 56 79 - -
Lele12g0538 713 MobiDBLite consensus disorder prediction 99 127 - -
Lele12g0538 713 MobiDBLite consensus disorder prediction 213 245 - -
Lele12g0538 713 FunFam TPR repeat-containing thioredoxin TTL4 605 711 - -
Lele12g0538 713 Pfam Thioredoxin 616 696 IPR013766 -
Lele12g0538 713 ProSiteProfiles TPR repeat profile. 241 274 IPR019734 GO:0005515
Lele12g0538 713 MobiDBLite consensus disorder prediction 52 153 - -
Lele12g0538 713 SUPERFAMILY Thioredoxin-like 538 706 IPR036249 -
Lele12g0538 713 SUPERFAMILY TPR-like 478 591 IPR011990 GO:0005515
Lele12g0538 713 Pfam Tetratricopeptide repeat 248 307 - -
Lele12g0538 713 CDD TRX_family 617 698 - -
Lele12g0538 713 Gene3D Glutaredoxin 599 710 - -
Lele12g0538 713 SUPERFAMILY TPR-like 240 467 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele12g0538 Lele-ChrLele12 13693326 13696191 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele12g0538 242 315 U-box Gene Family AT3G07370 33.784 3.48e-06 47.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele29g0774 29 5013879 5018055 Lele12g0538 12 13693326 13696191 CCT
Lele30g0629 30 10979880 10984089 Lele12g0538 12 13693326 13696191 CCT
Lele12g0538 12 13693326 13696191 Lele12g0538 12 13693326 13696191 ECH
Lele09g0800 09 6339803 6342862 Lele12g0538 12 13693326 13696191 hybridization
Lele10g0729 10 5572375 5575242 Lele12g0538 12 13693326 13696191 hybridization