Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele12g0536 ATGGAAGGCTTTGCTTGGAGTTCACCAGGTATTTGTGGAAATGCCTCAGAGAAAAGTACTCATGGTTTTAGAGTTGATAATTCCGGTGTTATGGAAACTGGGTTTGCTTCATCTTCTTCTCTGGTTTTGGATAACCAGATAGTTCAAGAACGAAACAAGGGCTTGTTGTCCTCTGAGAGAAGCGTCGCAGCTTTAAAGAACCATAGCGAGGCAGAACGAAGAAGAAGAGCAAGGATCAATGCTCATCTTGATACTCTTCGCACAGTGATTCCAGGTGCTAACAAGATGGATAAAGCATCATTACTTGGTGAGGTGATCAGACATTTGAAAGATCTAAAAGGGAATGCAGCAGAAGCTTGCGAGGGTTTAATGGTACCAAAGGACGGTGACGAGATAAGAGTTGAAGAACAAGAAGGTGGTTCTAATGGTTTTCCTTATTCAATTAGGGCGTCACTGTGTTGTGAGTATAAACCTGGGTTGTTGTCTGATATAAGACAAGCACTTGATGCTCTTCATCTGATGATAATGAAGGCAGAGATTGCAACATTAGGAGGGAGGATGAAGAATGTGTTTGTGATAATAAGCTGTGAAGAGCATATCAACATTGAAGATTCTGAGCATAGACAATTTCTTGCTGGTTCTGTTCATCAAGCTCTTAAGTCTGTGGTTGATAGATTCTCTGCTTCACAGGATCTCTTAGGAATCAGAAAGAGAAGGAGGATTTCTGTGTTCAATTCATCATCTCTAGGTGAGTTCTGGCAGAAGCGTTTCGGTCCCGCTTCATTTCTTCCTGAGGTTAGGAAAGCTGAGACAGACCTTCGTTCTGTTGAGTCTTCATCAATCTGTCGAAACAAACTCGCAACCTATTTCAACAAAATTCGATTCCTTCATCTGATTTATCTGTTGTTCTACTTACTGCCTTCAAATTTTCAGTCTCTCTCTCTCATTCCGTCAATCATGGCACAGGAAGAGAAGAAATCTGACATTCAGAAAATTGGAGACGCAAGCGAACATGTTGATGAGGCCGTAGAGCTCGTTCTCTTTCAAGTGTCTGAATGCTACGTATATATAATTCCCCCCAGGAAGAGCGCAGCTTCTTACAGGGCTGATGAATGGGATGTGAACAAATGGGCATGGGAAGGGACATTGAAAGTCATTAGCAAGGGAGAACTATGCATTATAAAACTTGAAGATAGGAAAACAGATGAACTATATGCTCGGGCATTTTTGAGAAAGGGAGAGCCGCATCCTGTGGAGCCTGTCATTGACAGCAGCAGATATTTTGTTCTTCGCATAGAAGAGAACATAGATGGCCGTCTTCGGCATGCCTTCATTGGTATAGGATTCCGAGAAAGAACAGAGGCTTATGACTTTCAAGCCGCCTTGCATGACCATATGAAATATCTGAACAAGAAGAAAGAAGCAGAAGAGATGGAACAGCATTTTCAGCATACTTCCTCAGTTGATTACAGTTTAAAAGAAGGAGAGACTCTCAAGCTGCAAATTAAGACGAATAGAAGTGGCCAAAATATAAAATCCAAGTTGCTTGAGCAGGGTCAGAACAGCCCCTCAGAAGAAAAATGTGATACAAAAGAATCCAAACAACTTAGCATTAAGTTACCACCCCCACCACCCCCAGGATCTCCTTCTACGGCCTCGCAGACATCTCCAACAAATTTCAGCCCTGAGAAAACTCCAAGGGATGAGATGTGTAAAATAGACAAAAAAGACCAAGAACATCAGAGTTTTCCAGAAAATCAGAGCACGCAGGATATACCAGATGATGATTTTGGCGACTTTCAAACAGCTGATTAA 1815 0.4198 MEGFAWSSPGICGNASEKSTHGFRVDNSGVMETGFASSSSLVLDNQIVQERNKGLLSSERSVAALKNHSEAERRRRARINAHLDTLRTVIPGANKMDKASLLGEVIRHLKDLKGNAAEACEGLMVPKDGDEIRVEEQEGGSNGFPYSIRASLCCEYKPGLLSDIRQALDALHLMIMKAEIATLGGRMKNVFVIISCEEHINIEDSEHRQFLAGSVHQALKSVVDRFSASQDLLGIRKRRRISVFNSSSLGEFWQKRFGPASFLPEVRKAETDLRSVESSSICRNKLATYFNKIRFLHLIYLLFYLLPSNFQSLSLIPSIMAQEEKKSDIQKIGDASEHVDEAVELVLFQVSECYVYIIPPRKSAASYRADEWDVNKWAWEGTLKVISKGELCIIKLEDRKTDELYARAFLRKGEPHPVEPVIDSSRYFVLRIEENIDGRLRHAFIGIGFRERTEAYDFQAALHDHMKYLNKKKEAEEMEQHFQHTSSVDYSLKEGETLKLQIKTNRSGQNIKSKLLEQGQNSPSEEKCDTKESKQLSIKLPPPPPPGSPSTASQTSPTNFSPEKTPRDEMCKIDKKDQEHQSFPENQSTQDIPDDDFGDFQTAD 604
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele12g0536 604 FunFam Adaptin ear-binding coat-associated protein 347 472 - -
Lele12g0536 604 Pfam Protein of unknown function (DUF1681) 344 503 IPR012466 GO:0006897|GO:0016020
Lele12g0536 604 CDD ACT_UUR-ACR-like 151 219 - -
Lele12g0536 604 PANTHER ATP-BINDING CASSETTE ABC TRANSPORTER-RELATED 340 602 - -
Lele12g0536 604 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 64 117 IPR036638 GO:0046983
Lele12g0536 604 SMART finulus 69 118 IPR011598 GO:0046983
Lele12g0536 604 Gene3D - 347 472 IPR011993 -
Lele12g0536 604 MobiDBLite consensus disorder prediction 515 604 - -
Lele12g0536 604 SUPERFAMILY PH domain-like 340 471 - -
Lele12g0536 604 Gene3D - 59 120 IPR036638 GO:0046983
Lele12g0536 604 CDD PHear_NECAP 346 467 IPR012466 GO:0006897|GO:0016020
Lele12g0536 604 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 63 112 IPR011598 GO:0046983
Lele12g0536 604 Pfam Helix-loop-helix DNA-binding domain 67 112 IPR011598 GO:0046983
Lele12g0536 604 MobiDBLite consensus disorder prediction 565 582 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele12g0536 Lele-ChrLele12 13659389 13664991 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele12g0536 60 255 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G68810 41.500 1.05e-31 124
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lele12g0536 DUF1681 1.5e-49 CL0266
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele12g0536 12 13659389 13664991 Lele12g0536 12 13659389 13664991 ECH
Lele09g0807 09 6401608 6404998 Lele12g0536 12 13659389 13664991 hybridization
Lele10g0731 10 5599310 5605650 Lele12g0536 12 13659389 13664991 hybridization