LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele12g0525	ATGGCGCAATTGCCTCCCAAGATCCCAAACATGGCGCCCAATTGGCCTGATTTTTCTTCTCAGCATCAGAAGATGCCTTCCCTTGTAAGTTTGTCGCCAAATAATGTGACTGCCACCACCAACGCAGCTGCTACCGCCACCTCCGCGGCCACCCACCAGAGTCCTTCTTGGGTGGATGAATTCCTCGACTTCTCGTCGGCCAGACAAGGGGCTCACCGGCGATCCGTGAGCGACTCAATTGCCTTCATTGAGGCGCCAATGCTGGACGATTGTCGTGGTAACTCCGGCGTGATTCCTCCGAGGTCGTCCGAGTTCGATAGATTTGATGATGACCAATTCATGTCTATGTTCACTGACGATTTATCCTGCGCTCCCATGCCTCCCACTATGTCGTCCTCGAATCCTTCAAGCCCTTCTGATCATAACAGCATTAATGATGAGAAAGAAACCGGCCAAAACCTGAACCAACCGAAGGAGACGAAGGAGAAGAAAGCGCATGATCAGCAGCAGAAACAAGTGAAGAATGAATCAGATGAGGTTGAAAACCAACATGAACAGGAAACTCAAGCTCCAAATAACACCAACACAACTTCTTCCGCTGACAAAATCACTGATCCTAAGAGAGTGAAAAGAATCCTGGCAAACAGACAATCTGCACAAAGGTCACGAGTGAGGAAGTTGCAGTACATATCAGAGCTTGAACGAAGTGTAACTTCATTACAGGCCGAAGTTTCAGTGCTGTCTCCAAGAGTTGCGTTTTTAGATCATCAACGATTGCTTCTAAATGTTGACAACAGTGCTCTGAAGCAAAGAATCGCCGCCCTTGCACAGGACAAGATCTTTAAGGATGCTCATCAAGAGGCTCTGAAGAGGGAGATAGAGAGACTAAGGCAAGTATATCACCATCAAAACCTCAAGAAAATGGAAAATAATGCTGCAGGGCCACCATCATCACCATCCTCATCTCCAACACCAAACACAGAATGTGCTGCTAAGACTACAGAAAACGAACAACTTCTCAATGTCTGA	1029	0.4733	MAQLPPKIPNMAPNWPDFSSQHQKMPSLVSLSPNNVTATTNAAATATSAATHQSPSWVDEFLDFSSARQGAHRRSVSDSIAFIEAPMLDDCRGNSGVIPPRSSEFDRFDDDQFMSMFTDDLSCAPMPPTMSSSNPSSPSDHNSINDEKETGQNLNQPKETKEKKAHDQQQKQVKNESDEVENQHEQETQAPNNTNTTSSADKITDPKRVKRILANRQSAQRSRVRKLQYISELERSVTSLQAEVSVLSPRVAFLDHQRLLLNVDNSALKQRIAALAQDKIFKDAHQEALKREIERLRQVYHHQNLKKMENNAAGPPSSPSSSPTPNTECAAKTTENEQLLNV	342

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele12g0525	342	SMART	brlzneu	203	267	IPR004827	GO:0003700\|GO:0006355
	Lele12g0525	342	PANTHER	BASIC LEUCINE ZIPPER 34	1	331	-	-
	Lele12g0525	342	Gene3D	-	206	277	-	-
	Lele12g0525	342	MobiDBLite	consensus disorder prediction	306	342	-	-
	Lele12g0525	342	MobiDBLite	consensus disorder prediction	1	22	-	-
	Lele12g0525	342	ProSiteProfiles	Basic-leucine zipper (bZIP) domain profile.	205	257	IPR004827	GO:0003700\|GO:0006355
	Lele12g0525	342	Coils	Coil	286	306	-	-
	Lele12g0525	342	Pfam	bZIP transcription factor	207	250	IPR004827	GO:0003700\|GO:0006355
	Lele12g0525	342	MobiDBLite	consensus disorder prediction	142	185	-	-
	Lele12g0525	342	MobiDBLite	consensus disorder prediction	186	202	-	-
	Lele12g0525	342	FunFam	Basic leucine zipper 61	206	279	-	-
	Lele12g0525	342	SUPERFAMILY	Leucine zipper domain	207	261	IPR046347	GO:0003700\|GO:0006355
	Lele12g0525	342	MobiDBLite	consensus disorder prediction	125	141	-	-
	Lele12g0525	342	MobiDBLite	consensus disorder prediction	310	342	-	-
	Lele12g0525	342	Coils	Coil	163	190	-	-
	Lele12g0525	342	CDD	bZIP_plant_RF2	208	258	IPR044759	GO:0003700\|GO:0006355
	Lele12g0525	342	ProSitePatterns	Basic-leucine zipper (bZIP) domain signature.	210	225	IPR004827	GO:0003700\|GO:0006355
	Lele12g0525	342	MobiDBLite	consensus disorder prediction	118	208	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele12g0525	Lele-ChrLele12	13553978	13556322	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele12g0525	1	284	bZIP Transcription Factor Family	AT3G58120	57.756	1.81e-96	286

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	bZIP	Lele12g0525		bZIP_1	3.1e-09	CL0018

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Lele12g0525	12	13553978	13556322	Lele12g0525	12	13553978	13556322	ECH
	Lele09g0815	09	6484076	6487013	Lele12g0525	12	13553978	13556322	hybridization
	Lele10g0743	10	5721475	5723825	Lele12g0525	12	13553978	13556322	hybridization