Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele12g0518 ATGTTGCAGACAAAAGTCAGTCCACAGGGTGACGACTCCCATACTTCCAAATATTCACTGCCTTTGTCAGCTCCCTGTCTTTTAACCTTTTCCCCTCTCTTCAGTCTCACCTTCACACTATCACCAGTTCCCCATTTCCAAGCTCCCGTGAATTCAAAGTCTGTCAATATTGGCCTTTCAGCCGGTAACAATTATAAATCCAATAATTCAGAGTCAAGCTCCAGAAAAAAAATACAGTTTGAGATGCTCCTGCAACAAAAGATGGATGACGCAGAAATCTTAAGTGGTTTTTCTCATCATCATCAGAACCCAACTGATCATCATCTTGAATCTAGTAACAACAACAACAATCCTCCCGTTTTGAAGAGGAAGAGAAACCTCCCAGGAAATCCAGATCCTGAAGCAGAGGTCATAGCGTTATCGCCCAAGACGCTGATGGCGACCAACAGATTCTTGTGTGAAATCTGTGGGAAGGGTTTTCAAAGGGATCAGAATCTGCAGCTGCATAGAAGAGGACACAATCTTCCATGGAAGTTGAAGCAGAGAACAAGCAAAGAACCAAGGAAGAGAGTGTATGTGTGCCCTGAGAAGACATGTGTCCACCATGACCCATCAAGGGCACTGGGAGACTTAACAGGAATAAAGAAGCACTTTTGCAGAAAACATGGAGAGAAGAAGTGGAAGTGTGAGAAGTGCTCAAAGAGATATGCTGTCCAATCTGACTGGAAAGCTCACTCTAAGACCTGTGGCACCAGAGAATACAAATGTGATTGTGGCACTATCTTTTCACGGAGGGACAGTTTCATAACTCACAGGGCATTCTGCGATGCACTAGCAGAAGAGACAGCAAGAGTGAATGCAGCATCCACAGTGAACAACTCCTTACTGGGTTACAACATTGTCATGGGAAATTCCCAACAAGGGCCTGCTGGCATAAGCATGATGACAAAACATTTTCCTTCGATTTTCAAGCCAATTTCAAACACTACTGATACTGCTGAAACAAATCATCAAGCAACTAGTGGGCTATCTCTATGGATGGGTCCAACTCATGAAAATTTGGCCGCTAATTTGAACTGTAATAACAATAACATGTTTGAGATTCATCATCATCAACTTGGATCAGTCGTCACGAGCTCATCATCAGGATCAATACTATTTGGGAACAACCGGCTTGTTTCATGCTCAAATCCGCAGCTGAATTGGGTGTTTGGGAGTAATAATAATAATAATAAGAACGGCAGTCGTCATCCTCAAGATCAGCTGATCAGTGTTCCTTCCTTGTACAGCTCCCAATATCAGCAATCCCATCAAACATCCTCGGCAAACATGTCGGCAACAGCCTTGTTGCAGAAAGCTGCTCAAATCGGGCCAACTTCAACCGACACGTCATTCCTGGGAAGTTTAGGGTTGAAATGCAGCAACGGTCAAGAACAAGAAGGGAACAATTTTTGCGGAATCTATGGTTCAGGTTCAGTACTCGTATCTAGCATGGGAATCGAGACGACAGAGAATCCTGCAAAACGGAGGAATATAGGGCAGAAAGAAGAGAATAATGGAGGAGAGCAAACTAGGGATTTTCTGGGCGTCGGAGTAGAATCCATTTGCCATGCTGCTCCAATCAACGGATGGATTTGA 1638 0.4389 MLQTKVSPQGDDSHTSKYSLPLSAPCLLTFSPLFSLTFTLSPVPHFQAPVNSKSVNIGLSAGNNYKSNNSESSSRKKIQFEMLLQQKMDDAEILSGFSHHHQNPTDHHLESSNNNNNPPVLKRKRNLPGNPDPEAEVIALSPKTLMATNRFLCEICGKGFQRDQNLQLHRRGHNLPWKLKQRTSKEPRKRVYVCPEKTCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCEKCSKRYAVQSDWKAHSKTCGTREYKCDCGTIFSRRDSFITHRAFCDALAEETARVNAASTVNNSLLGYNIVMGNSQQGPAGISMMTKHFPSIFKPISNTTDTAETNHQATSGLSLWMGPTHENLAANLNCNNNNMFEIHHHQLGSVVTSSSSGSILFGNNRLVSCSNPQLNWVFGSNNNNNKNGSRHPQDQLISVPSLYSSQYQQSHQTSSANMSATALLQKAAQIGPTSTDTSFLGSLGLKCSNGQEQEGNNFCGIYGSGSVLVSSMGIETTENPAKRRNIGQKEENNGGEQTRDFLGVGVESICHAAPINGWI 545
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele12g0518 545 FunFam protein indeterminate-domain 12-like 130 198 - -
Lele12g0518 545 ProSiteProfiles Zinc finger C2H2 type domain profile. 151 173 IPR013087 -
Lele12g0518 545 MobiDBLite consensus disorder prediction 505 524 - -
Lele12g0518 545 Gene3D Classic Zinc Finger 186 275 - -
Lele12g0518 545 SMART c2h2final6 151 173 IPR013087 -
Lele12g0518 545 SMART c2h2final6 192 222 IPR013087 -
Lele12g0518 545 SMART c2h2final6 227 247 IPR013087 -
Lele12g0518 545 MobiDBLite consensus disorder prediction 97 134 - -
Lele12g0518 545 MobiDBLite consensus disorder prediction 508 522 - -
Lele12g0518 545 Gene3D Classic Zinc Finger 147 174 - -
Lele12g0518 545 FunFam protein indeterminate-domain 5, chloroplastic-like 205 284 - -
Lele12g0518 545 ProSitePatterns Zinc finger C2H2 type domain signature. 153 173 IPR013087 -
Lele12g0518 545 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 98 530 IPR031140 -
Lele12g0518 545 SUPERFAMILY beta-beta-alpha zinc fingers 150 247 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele12g0518 Lele-ChrLele12 13445739 13450286 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele12g0518 117 545 IDZ Gene Family AT1G03840 51.491 3.04e-142 418
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lele12g0518 None None None
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele12g0518 12 13445739 13450286 Lele12g0518 12 13445739 13450286 ECH
Lele09g0827 09 6568340 6570841 Lele12g0518 12 13445739 13450286 hybridization
Lele10g0752 10 5787445 5789943 Lele12g0518 12 13445739 13450286 hybridization