Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele12g0517 ATGACTCAGTGCAATGACCCTGAAAATAATATCATCATCGACAAACGCAAAGACAGCTTAATCACAACAACATGCCCTTCCTGTGGACATCGTATCAAATCCCACGAACAGGCTGGGATCCATGACTTGCCTGGGCTGCCTTCTGGAGTAAAGTTTGATCCGACAGATCAAGAGATTCTTGAACATTTGGAAGCAAAAGTTCGATCTGATATTCATAAGCTTCATCCACTGATTGATGAGTTCATCCCTACTCTTGAAGGCCAGAATGGAATCTGCTATACTCATCCTGAGAAGCTTCCAGGAGTAAGCAAAGATGGTCTGGTGCGCCATTTCTTTCACAGGCCATCGAAAGCATACACGACAGGAACAAGGAAACGGAGGAAAGTGCACACTGATGACGTGGACGGGAGCGAGACACGTTGGCACAAGACAGGGAAGACGAGGCCAGTGTATCTGAGTGGGAAGCTAATAGGGTACAAGAAGATTCTGGTGCTTTACACAAACTATGGGAAGCAAAGAAAGCCAGAGAAGACGAACTGGGTAATGCATCAGTACCACCTGGGATATAACGAAGAAGAGAAAGAAGGAGAGTTAGTTGTGTCCAAGGTTTTCTATCAAACACAACCTCGGCAATGTGGTTCCTTGCTCATGACAGATCAGTCAATGAATCCTGCAAAACTCAAAACTCAGGCCATGTACGAGGCTGCCGCAAATAATCATAAGAACAATGATAATGGGTTCGTTGAGTTCTATGGTTCTTCTTTCTTGTCGTTTGATCAAGGAAACCAACACAACAGTTCTAGTAATTCTCAAGTGATCTCCCATTTTCCTGTTCAGGATGGTTCTTCTTTCAATATTCCATGA 864 0.441 MTQCNDPENNIIIDKRKDSLITTTCPSCGHRIKSHEQAGIHDLPGLPSGVKFDPTDQEILEHLEAKVRSDIHKLHPLIDEFIPTLEGQNGICYTHPEKLPGVSKDGLVRHFFHRPSKAYTTGTRKRRKVHTDDVDGSETRWHKTGKTRPVYLSGKLIGYKKILVLYTNYGKQRKPEKTNWVMHQYHLGYNEEEKEGELVVSKVFYQTQPRQCGSLLMTDQSMNPAKLKTQAMYEAAANNHKNNDNGFVEFYGSSFLSFDQGNQHNSSSNSQVISHFPVQDGSSFNIP 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele12g0517 287 MobiDBLite consensus disorder prediction 125 140 - -
Lele12g0517 287 PANTHER NAC DOMAIN-CONTAINING PROTEIN 73 18 253 IPR044799 GO:0003700
Lele12g0517 287 MobiDBLite consensus disorder prediction 119 140 - -
Lele12g0517 287 ProSiteProfiles NAC domain profile. 46 206 IPR003441 GO:0003677|GO:0006355
Lele12g0517 287 Pfam No apical meristem (NAM) protein 47 187 IPR003441 GO:0003677|GO:0006355
Lele12g0517 287 FunFam NAC domain-containing protein 73 55 210 - -
Lele12g0517 287 Gene3D NAC domain 55 210 IPR036093 GO:0003677|GO:0006355
Lele12g0517 287 SUPERFAMILY NAC domain 40 206 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele12g0517 Lele-ChrLele12 13438241 13440029 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele12g0517 1 213 NAC Transcription Factor Family AT4G28500 74.336 8.18e-122 349
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Lele12g0517 NAM 2e-22 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele12g0517 12 13438241 13440029 Lele12g0517 12 13438241 13440029 ECH
Lele09g0828 09 6577546 6579284 Lele12g0517 12 13438241 13440029 hybridization
Lele10g0753 10 5797965 5799752 Lele12g0517 12 13438241 13440029 hybridization