Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele12g0506 ATGCTAGCGGTGTCACCTCTTAGAAGCACAAATGATGAAGAAGGACAAGGAGAGATGGAGAGATTTTTGATGGACGTTCATGAATTCGGTGACCGCTCCGATGGGAATTTATTAGAAAGCATCAACTTCGACGATATCTTCGTCAGCATCAACGACGGAGATGTCTTGCCGGATTTGGAAATGGACCCCGAGATCTTCGCCGACTTCTCCCTCAGCGCCGGCGAGGACTCCGAGATGGCCACGTCATCATCGTTATCGGTGGAAAACGTCAATAACTATAATAATAATGTTGACCAGAATATTATAAAGACATCGACGATGAAGAAAGTAGGGGAAGATAAAGTGTCATCGGATTCGGGTTCCGGTTCGGGTTCGAATTCTGGAGAGGAGATAGTGAGCAAAAGGGATGAATCCGCGGTTGTTAAGCCGTCTCAGAAGGAAGTTCACAAAGGAAGAAAATTATCAGCTGAATCAAAGAATTCTCAAGGGAAGAGAAAAGTGAAGGTAGATTGGACTCCAGAATTGCACAGGAGATTCGTGCAAGCAGTGGAGCAACTAGGAGTGGATAAGGCGGTGCCTTCGAGAATTCTGGAAATTATGGGAATTGATTGTCTCACTCGCCATAACATAGCCAGCCATCTCCAAAAATACCGATCCCATAGGAAACATCTGATGGCACGCGAAGCAGAAGCAGCAAACTGGAGCAAGAGAAGGCAATGTTATGTTATAGGTGGCGGAGGAGGAGGTAAAAGAGAGGGAAGCCCTTGGCTGGCAGTAGCACCGACAATAGGTTTCCCTCCGGTGACGCGGCCGCCGCCAATGCAGCATTTTAGAGACTTACATGTGTGGGGTCATCCCACCATGGACCACTCCTTCATGCCATTGTGGCCTAAGCATCTCCCTCCACACTCCCCTTCGCCGCCCCTGGCTTGGGCTCCGCCCACTCCCCCGCCTCTTGACCCTTCCTATTGGCACCAACCGGCTCCCAATGCACTAACGCCAGGAACACCTTGCTTCCCACAGCCTCTGACTACAACGAGATTTTCATCTCCATCACCTGTCCCGGGTATCCCACCACACCACCATGCCATGTACAAAGTAGATCCCAGCATCGGCGTCCCCAACACCGGCCAATCTAGTCCTCGGCCGCTCGTTGATTTTCATCCTTCAAAGGAGAGTGTAGATGCAGCTCTTGGAGATGTTTTATCAAAGCCATGGCTGCCACTTCCTCTAGGGCTTAAAGCTCCAGCGCTTGACAGTGTCATGGGGGAATTACATAGACAAGGAATCCCAAAAGTTCCCCCTTCTTGTGCTTGA 1317 0.5004 MLAVSPLRSTNDEEGQGEMERFLMDVHEFGDRSDGNLLESINFDDIFVSINDGDVLPDLEMDPEIFADFSLSAGEDSEMATSSSLSVENVNNYNNNVDQNIIKTSTMKKVGEDKVSSDSGSGSGSNSGEEIVSKRDESAVVKPSQKEVHKGRKLSAESKNSQGKRKVKVDWTPELHRRFVQAVEQLGVDKAVPSRILEIMGIDCLTRHNIASHLQKYRSHRKHLMAREAEAANWSKRRQCYVIGGGGGGKREGSPWLAVAPTIGFPPVTRPPPMQHFRDLHVWGHPTMDHSFMPLWPKHLPPHSPSPPLAWAPPTPPPLDPSYWHQPAPNALTPGTPCFPQPLTTTRFSSPSPVPGIPPHHHAMYKVDPSIGVPNTGQSSPRPLVDFHPSKESVDAALGDVLSKPWLPLPLGLKAPALDSVMGELHRQGIPKVPPSCA 438
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele12g0506 438 MobiDBLite consensus disorder prediction 104 168 - -
Lele12g0506 438 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 163 222 IPR017930 -
Lele12g0506 438 SUPERFAMILY Homeodomain-like 164 223 IPR009057 -
Lele12g0506 438 MobiDBLite consensus disorder prediction 130 168 - -
Lele12g0506 438 FunFam Two-component response regulator 162 225 - -
Lele12g0506 438 PANTHER TRANSCRIPTION ACTIVATOR GLK1 1 437 IPR044825 GO:0003700|GO:0045893
Lele12g0506 438 Gene3D - 163 224 - -
Lele12g0506 438 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 166 220 IPR006447 GO:0003677
Lele12g0506 438 Pfam Myb-like DNA-binding domain 169 218 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele12g0506 Lele-ChrLele12 13233797 13237430 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele12g0506 53 438 G2-like Transcription Factor Family AT2G20570 41.748 1.85e-59 197
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Lele12g0506 Myb_DNA-binding 5.7e-08 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele12g0506 12 13233797 13237430 Lele12g0506 12 13233797 13237430 ECH
Lele09g0831 09 6603869 6607766 Lele12g0506 12 13233797 13237430 hybridization
Lele10g0758 10 5886221 5890047 Lele12g0506 12 13233797 13237430 hybridization