LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele12g0496	ATGACGATGACGGATAACTTCCTGATTTCCAGGGTGAACGAAGATGCTCAGGATCCTCTCTTACCTTACCTCTTGTCTATTAGGGAAGCTCTTGAAGATACCATCTCCGGACGAACTTCCAATTTGCGTCTCGTAACACTTCTACAAGATTGCATCAGAAAGTTCAAGCACAATGTCCAGTACAGAAATGACATCAGATTTCTCAAGATTTGGCTCCTACATATGGATGCTAGTAAGGATTTTAATAATGTGTTTAAAGAAATGCTGGATAGTAATGTATGTGCCAACCAGTCTTCACTTTACGTATGGTCTGCATATTTTTTTGAATCCAAAGGGAGATTGCATGACGCTCACACGGCCTATCAGCTTGGCATCTCCAGGAATGCAGAACCAATTGCGTGGTTGAAGAAAGCGCATAAATTGTTCCTCAATAGAATTTCTGAAATAGCGACTGTTGCTCCACGTCAGAAGATTGATGATAAAGAATCCATGAAATTTGGAAAGGAAGCCATTAATCCATGGAGCACCTCAATCATGGATGATCTATTGAAGTGGATAAATTCTTTGATCACAAAATGTGATGGGTATCATTCAAGTAACAAAGCTTACACAGGAAAAGTTGCTTTATCTTCTTTGAAGAATTCATCAAGGAATAAAATTGTAGAGATAGGTGGAAAGAAGTATCAAATCAAGGGTTGTGCCGGACAAGGTGGTTTCGCTCAAGTATACAAGGCATATGTTAATAGTAATCCCGATGAAGTTGTCGCGCTGAAGATCCAAAAACCAGCATTCCCTTGGGAATTTTACATCTATCGTCTGCTTGATCAACGTATCTTAGAGGTTGAAAGACCAAGCTATGGCTTTGCCCATAGAGTTCATATCTATTCTGACTGTAGCATACTCATATGTGACTATTTGGCTCATGGGACATTACAGGATGTCGTGAATTCATATTTGGTTCTGGGGAAATCCATGGAAGAAGTGCTGTGCATTTACTACACTGTAGAAATGCTACATATGCTTGAGAAATTGCATGATGTTGGCATAATTCATGGTGATTTCAAGCCTGATAACCTGCTTATTCGTTATGCTAGTGGTGACCTTAAAGAAGATGAGTTTTTGAGCAGAAGTGGTCCTTGGCGTGATCAGGGTCTTTGCCTTGTAGACTGGGGAAGAGGAATTGATCTTCGTCTCTTTCCGGATCACACAGTATTTAACGGAGACTGCAGAACTTCTGGGTTTCGTTGCATTGAGATGCAAGAGAAAAGAACATGGAAATTTCAGGTAGACGCATATGGCCTTTGTGCTGTTGTCCACTTGATGTTGCATAATACTTATATGGAGATTGTCAAAAAAGAATCATCCGATGGGGGCTACGTTTATCTGCCCAGACTGCCATTTAAACGTTACTGGAACGTTGAGCTGTGGAAGACTTTCTTTACCAAGATGTTAAACCAATACCCTGGCAATGATGATAGAAGGTTGCTGCAGGAGTTGAGAAAGTCCTTCGAGGACTATATGGGCTCCAATCCACAGCTTATAAAGAAGCTAAAGGAGTTACTTGTGAAGCAAAGGGCTTCCCTGTGCTCTGCTTAG	1596	0.4091	MTMTDNFLISRVNEDAQDPLLPYLLSIREALEDTISGRTSNLRLVTLLQDCIRKFKHNVQYRNDIRFLKIWLLHMDASKDFNNVFKEMLDSNVCANQSSLYVWSAYFFESKGRLHDAHTAYQLGISRNAEPIAWLKKAHKLFLNRISEIATVAPRQKIDDKESMKFGKEAINPWSTSIMDDLLKWINSLITKCDGYHSSNKAYTGKVALSSLKNSSRNKIVEIGGKKYQIKGCAGQGGFAQVYKAYVNSNPDEVVALKIQKPAFPWEFYIYRLLDQRILEVERPSYGFAHRVHIYSDCSILICDYLAHGTLQDVVNSYLVLGKSMEEVLCIYYTVEMLHMLEKLHDVGIIHGDFKPDNLLIRYASGDLKEDEFLSRSGPWRDQGLCLVDWGRGIDLRLFPDHTVFNGDCRTSGFRCIEMQEKRTWKFQVDAYGLCAVVHLMLHNTYMEIVKKESSDGGYVYLPRLPFKRYWNVELWKTFFTKMLNQYPGNDDRRLLQELRKSFEDYMGSNPQLIKKLKELLVKQRASLCSA	531

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele12g0496	531	SMART	serkin_6	228	507	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lele12g0496	531	ProSiteProfiles	Protein kinase domain profile.	228	531	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lele12g0496	531	SUPERFAMILY	Protein kinase-like (PK-like)	225	508	IPR011009	-
	Lele12g0496	531	Gene3D	Transferase(Phosphotransferase) domain 1	225	529	-	-
	Lele12g0496	531	Pfam	Protein kinase domain	230	445	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lele12g0496	531	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	349	361	IPR008271	GO:0004672\|GO:0006468
	Lele12g0496	531	SMART	mad3_bub1_i	8	125	IPR013212	-
	Lele12g0496	531	PANTHER	MITOTIC CHECKPOINT SERINE/THREONINE-PROTEIN KINASE BUB1	168	525	IPR015661	GO:0007094
	Lele12g0496	531	Gene3D	-	9	162	-	-
	Lele12g0496	531	ProSiteProfiles	BUB1 N-terminal domain profile.	7	163	IPR013212	-
	Lele12g0496	531	Pfam	Mad3/BUB1 homology region 1	13	125	IPR013212	-
	Lele12g0496	531	FunFam	Mitotic checkpoint serine/threonine-protein kinase BUB1	226	528	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele12g0496	Lele-ChrLele12	13097410	13106498	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele12g0496	226	373	CBL-interacting serine-threonine protein kinases	AT5G45820	31.013	3.41e-07	50.8

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	BUB	Lele12g0496		Pkinase	3.6e-11	CL0016