Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele12g0494 ATGTTATGCTTAGGATTTGATATGGTTGCCCCTGAAAAATTGAACTTTTGTTTGTTTAAGAGGAAGGGAATAGGGTTTTTATTCCAGATTGTGCATGTGGGGTGGGTTGTTCTACTGTTACTTCGACCTGTGGCGGGTCTGAGACCATTAAGAGAAAGAACTCGGTCATGGAGCGATGAGTGGCTATTTTCAACAAAAGATGAAAGTGATCAATTTTCACAGTGGAACATAACAGGAACTTACAAAGGGACGTGGAATTTTTTAGATACTACAAATGGCTCTTCAAGATTTTCAGACATGAGAAAAACAAATGGCAATTCTGTAATTGAATTATTTAGTACGCCCACAAAAATAACTGGTGTGCATTTTGTCAAGGGGGTGGTTATATTCCATGATGTGTTGGACAACGAATACAATGTTGGTGGTGCTCAAATCAGAGTGGAAGGTGTATATATATGGCCTTTTAAACAGCTTCGAATGGTAGCTAACAGTGGAAAAGAGGGAAATTCAAATCAGGATGAAGATTATATCTTATCTAATCCATATCATCTGCTTGGATTGTTCTCATCTCAGGTATTCCAAGAATCCTCACGAGATAAGACACAGAGAAGGAAACATTCACCAATATATGACATGGAGAAACATTGTAATATTGAAATTGCAGCACAGTTTTCACGCCTATCATCATCAAAGAGTGATGGGGAACGTGATCGATTCCACCTAGAAGGGTTGATGGAGAGTCCCTCAGTGGATGATGATGGGGATTGCTTCTCACCTTTAACGTTAAATGCAACTTCTGTTAACATTGAGGTCTACTATAACAAAGCAGTGAACTACACCTTGATGGTTACCTTTATCTCTTTCTTGCAAGTTCTTCTATTGATTCGGCAAATGGAACATAGCAACACTCAATCTGGGGCTGCTAAGGTTTCAATAATCATGATTGGCCAACAGGCTATAATGGATGCTTATCTTTGCCTTTTACATTTGACCGCAGGAATACTAGTTGAATCCTTGTTTAATGCTTTTGCAACTGCTGCTTTTTTCAAGTTTGTGGTCTTCTCGATATTTGAGATGAGATATCTCCTTGCGATATGGAAGGCAAATAGACCTTTGAGTAATGGGGAAGGTTGGGAGACAATGAGGCGTGAGCTCTCGTCTTTATACATTCGTTTCTATGGGATCCTGGTGGGAGGAATTCTGTTCATGTACCAGTTCCATTATTATTTGAGACCTATACTTCTTCTCGGGTACTCATTTTGGATACCTCAGATAATTACCAATGTTATTCGAGATTCACGCAAACCATTGCATCCCCATTATATCTTAGGGATCACTGTCACTCGCCTAGCAGTGCCATTATATACATTTGGTTGTCCGAAAAACTTCATGCGCATTGAACCAGACAAGAGCTGGTGTTTGTGTTTGGCTACATTTATTGGACTTCAGGTTGCCATTCTTCTACTTCAGAACTATCTTGGGTCCCGCTGGTTCATTCCTCGTCAGATTCTGCCCGAGAAATACAGCTATTACAGGAGGTTTGGTCAAAATACAAATCATGCTACAGATTGTGTTATTTGCATGACGGCTATTGATCTTTCTCAGCGATCAAATGATTGCATGGTGACACCTTGTGAGCATTTCTTCCACTCTGGTTGTTTGCAAAGATGGATGGATATAAAGATGGAGTGCCCAACATGCCGGCGCCCTCTGCCGCCTGCTTAG 1725 0.4052 MLCLGFDMVAPEKLNFCLFKRKGIGFLFQIVHVGWVVLLLLRPVAGLRPLRERTRSWSDEWLFSTKDESDQFSQWNITGTYKGTWNFLDTTNGSSRFSDMRKTNGNSVIELFSTPTKITGVHFVKGVVIFHDVLDNEYNVGGAQIRVEGVYIWPFKQLRMVANSGKEGNSNQDEDYILSNPYHLLGLFSSQVFQESSRDKTQRRKHSPIYDMEKHCNIEIAAQFSRLSSSKSDGERDRFHLEGLMESPSVDDDGDCFSPLTLNATSVNIEVYYNKAVNYTLMVTFISFLQVLLLIRQMEHSNTQSGAAKVSIIMIGQQAIMDAYLCLLHLTAGILVESLFNAFATAAFFKFVVFSIFEMRYLLAIWKANRPLSNGEGWETMRRELSSLYIRFYGILVGGILFMYQFHYYLRPILLLGYSFWIPQIITNVIRDSRKPLHPHYILGITVTRLAVPLYTFGCPKNFMRIEPDKSWCLCLATFIGLQVAILLLQNYLGSRWFIPRQILPEKYSYYRRFGQNTNHATDCVICMTAIDLSQRSNDCMVTPCEHFFHSGCLQRWMDIKMECPTCRRPLPPA 574
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele12g0494 574 PANTHER RING ZINC FINGER PROTEIN 110 573 - -
Lele12g0494 574 FunFam E3 ubiquitin-protein ligase, putative 510 574 - -
Lele12g0494 574 ProSiteProfiles Zinc finger RING-type profile. 524 568 IPR001841 -
Lele12g0494 574 SUPERFAMILY RING/U-box 523 573 - -
Lele12g0494 574 SMART ring_2 524 567 IPR001841 -
Lele12g0494 574 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 512 574 IPR013083 -
Lele12g0494 574 SMART ringv_2 523 568 IPR011016 GO:0008270
Lele12g0494 574 Pfam Ring finger domain 523 568 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele12g0494 Lele-ChrLele12 13083301 13091236 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele12g0494 519 574 C3H Transcription Factor Family AT2G35420 37.500 8.08e-08 52.0
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele12g0494 12 13083301 13091236 Lele30g0843 30 12510693 12511666 CCT
Lele12g0494 12 13083301 13091236 Lele32g0546 32 3385064 3386085 CCT
Lele12g0494 12 13083301 13091236 Lele12g0494 12 13083301 13091236 ECH
Lele09g0843 09 6683797 6691987 Lele12g0494 12 13083301 13091236 hybridization
Lele10g0770 10 5990065 5998090 Lele12g0494 12 13083301 13091236 hybridization