Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele12g0492 ATGCAGTGTCACAAAGCTGAAAAAGAGGTGCGTTGCCTTGAGGAGCAAAGCGGTTCCCAGAAAAGGCTCTCCTCTTCCATGTCACTGCACGCTTTCAAGGAAACTCTCAAGCCTTGCTCAAGCCAACCGTCTTCTTCTACATCTTTTAGCCGAACGCAGTTTTCGCTTTTCCGAGATTCCCAACTCCCAATCCCTAGGAAACCCCCAAAGTCCTCTCTCGCCCAGCAGCTTCGTCGCCTGCAAGACCCACTTGCTCCGCCGCTAATTAAGCCTCACAATTCACCTAAGCGAGAAAGGGAACAGAAAAGTAGTGACGTCGTCGATGAGGAAGAAGAAGAGGAGGAGGAGGAGCCAGAATTGAAGAGAGCGAAATTCGGTGGGGCTAAAGTGTGTCAGTTTCAGTTCGATCATACTGGACCTTTTGAGCCTCTGGTCTTGTCTTCGGATGGAGAAGTTCCAGTGGTTCAGGTTCCTGCACCTATCAACTGCAGACTGCTTGAACATCAAAGATCAGGAGTGAAGTTTCTGTATAGTTTGTATAAAAACAATCATGGAGGCATTCTTGGCGATGACATGGGCCTTGGGAAGACCATTCAAACAATAGCATTTCTTGCTGCTGTGTTCGGTAAAGATGGAGAATATATGCCAAAGGAAAACCAAGCAATGAAAAGAGATCCTGTATTAATAATTTGCCCAACTTCTGTTATCCACAACTGGGAGAGTGAATTCTCTAAATGGGCAAACTTTAGTGTTTCCATTTATCACGGTTCAAACCGAGATCTGATATATGATAAATTGGAAGCACATGGAGTGGATATACTTGTTACTAGTTTTGACACATACAGAATTCATGGTAGCATCTTGTCAGAAATCAAATGGGACATTGTGGTTGTTGATGAGGCTCATCGGCTCAAGAATGAGAAATCCAAACTCTACAGAGCATGTTTAGAAATAAAAACACAAAAACGTTTTGGTCTTACTGGAACGATCATGCAAAATAAGATCATGGAACTGTTTAATCTCTTTGACTGGGTTGTTCCAGGATCCCTGGGAACACGGGAACACTTTCGAGATTTCTATGATGAACCCCTGAAGCATGGTCAGAGGTCAACTGCTCCAAAGAGGTTTGTTGAAATTGCCAACAAGCGAAAACAGCAACTTGTGACTGTTCTTCAGAAATATATGCTAAGAAGGACAAAGGAAGAGACCATTGGGCATCTTATGATGGGAAAGGAAGATAATGTTGTGTTCTGTGCCATGAGTGAATTACAAAAACGGGCATATAGGAGAATGTTACAACTCCCTGATGTCCAATGCCTTATTAATAAGGATTTGCCTTGTAGTTGTGGAAGCCCACTAACTCAAGTTGAATGTTGCAAGAGGATTGTATCAAATGGAATCATTTGGCCTTACCTTCACAGAGATAACCCTGATGGTTGTGATTCATGTCCCTTTTGCCTTGTCCTTCCTTGCCTTGTCAAGCTCCAACAGATAAGCAATCACCTTGAGTTGATCAAGCCAAACCCCAAAGATGACCCGGACAAACGAAGAAAAGATGCCGAGTTTGCTGCTGCTGTCTTTGGCCCTGATATTGGTTTGGTGGGTGGGAACACTCAGAATGAGAATTTTATGGGTCTAAGTGATGTGAAACATAGTGGCAAAATGAGAGCACTTGAAAAACTTTTGTTTTCATGGATCTCTCAGGGTGATAAAATTCTTTTGTTTAGCTATTCTGTAAGAATGCTTGACATACTGGAGAAATTTCTTATAAGAAAAGGCTACTGCTCCTCAAGACTTGATGGATCCACTCCAACTAATTCACGTCATTCTCTGGTTGATGACTTCAACTCAAGTCCAAGCAAACAAGTATTCTTGATATCAACTCGAGCTGGCGGGCTTGGATTGAACCTTGTCAGTGCAAATCGTGTGGTGATATTTGATCCCAACTGGAATCCCTCTCAAGATTTACAGGCACAGGACCGGTCATTCCGATTTGGGCAGAAGCGACATGTTGTGGTATTCCGGCTTCTTGCAGCTGGTTCACTTGAAGAGCTTGTTTATTCTCGTCAGATCTATAAGCAGCAACTATCAAACATTGCTGTCTCTGGAAAAATGGAAAAGCGTTATTTTGAAGGGGTCCAGGACTGCAAGGAATTTCAAGGGGAACTTTTTGGAATATGCAATTTATTTCGAGATTTATCTGACAAGCTTTTTACAAGTGAAATAATTCATGTGCGTGATAAGGAAGGAAAAGAACATGGGCATAGAATAGACCGGGGAGAAAAACTTGTTCCTTCAGAAGAAGCTGACATCTTATTATCAGAGTCTGGGAACCGGTTATCAACCAATTATAAGAGGACTTCAACGAGTGAAGCAGATCTGGAAGATCTTGGCATTCTCTATGCACATCGGAATGAAGACATAGTCAACTTTGGTTCCGGCATTCAAGGGAAGACAGAGACCAACGTCTATCACAGTGAAAGCCAAAGCATGCATGTTGTCCAGAGAGAAGAACTAGATTGTGTAGTTGAAAAACGGAAAGCTCCTATCATAAATGAGAGGAAGAGAGCCCAATATAGGCTGCTCGCTCAGTCTAGAGGCATGGGAGAGCTTGAATTTAGCATGTGGTTATTATCAGCGACTCCAATGGAAAGAGAGGAAGTGCTTCAAGACTACAGGAGGAAGAAGATACCTTGA 2697 0.4279 MQCHKAEKEVRCLEEQSGSQKRLSSSMSLHAFKETLKPCSSQPSSSTSFSRTQFSLFRDSQLPIPRKPPKSSLAQQLRRLQDPLAPPLIKPHNSPKREREQKSSDVVDEEEEEEEEEPELKRAKFGGAKVCQFQFDHTGPFEPLVLSSDGEVPVVQVPAPINCRLLEHQRSGVKFLYSLYKNNHGGILGDDMGLGKTIQTIAFLAAVFGKDGEYMPKENQAMKRDPVLIICPTSVIHNWESEFSKWANFSVSIYHGSNRDLIYDKLEAHGVDILVTSFDTYRIHGSILSEIKWDIVVVDEAHRLKNEKSKLYRACLEIKTQKRFGLTGTIMQNKIMELFNLFDWVVPGSLGTREHFRDFYDEPLKHGQRSTAPKRFVEIANKRKQQLVTVLQKYMLRRTKEETIGHLMMGKEDNVVFCAMSELQKRAYRRMLQLPDVQCLINKDLPCSCGSPLTQVECCKRIVSNGIIWPYLHRDNPDGCDSCPFCLVLPCLVKLQQISNHLELIKPNPKDDPDKRRKDAEFAAAVFGPDIGLVGGNTQNENFMGLSDVKHSGKMRALEKLLFSWISQGDKILLFSYSVRMLDILEKFLIRKGYCSSRLDGSTPTNSRHSLVDDFNSSPSKQVFLISTRAGGLGLNLVSANRVVIFDPNWNPSQDLQAQDRSFRFGQKRHVVVFRLLAAGSLEELVYSRQIYKQQLSNIAVSGKMEKRYFEGVQDCKEFQGELFGICNLFRDLSDKLFTSEIIHVRDKEGKEHGHRIDRGEKLVPSEEADILLSESGNRLSTNYKRTSTSEADLEDLGILYAHRNEDIVNFGSGIQGKTETNVYHSESQSMHVVQREELDCVVEKRKAPIINERKRAQYRLLAQSRGMGELEFSMWLLSATPMEREEVLQDYRRKKIP 898
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele12g0492 898 SMART ultradead3 161 356 IPR014001 -
Lele12g0492 898 MobiDBLite consensus disorder prediction 80 121 - -
Lele12g0492 898 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 177 348 IPR014001 -
Lele12g0492 898 PANTHER SNF2/RAD54 FAMILY MEMBER 33 836 - -
Lele12g0492 898 Pfam SNF2-related domain 181 438 IPR000330 GO:0005524|GO:0140658
Lele12g0492 898 CDD SF2_C_SNF 548 677 - -
Lele12g0492 898 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 402 721 IPR027417 -
Lele12g0492 898 FunFam Switch 2 147 397 - -
Lele12g0492 898 Pfam Helicase conserved C-terminal domain 554 666 IPR001650 -
Lele12g0492 898 Gene3D - 144 397 IPR038718 -
Lele12g0492 898 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 557 710 IPR001650 -
Lele12g0492 898 SMART helicmild6 583 666 IPR001650 -
Lele12g0492 898 Gene3D - 410 742 IPR027417 -
Lele12g0492 898 MobiDBLite consensus disorder prediction 1 16 - -
Lele12g0492 898 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 152 398 IPR027417 -
Lele12g0492 898 MobiDBLite consensus disorder prediction 1 26 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele12g0492 Lele-ChrLele12 13060049 13069227 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele12g0492 569 696 RAD5 or RAD16-like Gene Family AT1G11100 36.719 1.10e-19 93.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Lele12g0492 SNF2_N 1.7e-56 CL0023