Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele12g0484 ATGGGTTGCATATGCTCCAAGACTTCAGCTGTGGAAGACAGCCGAGAAGGTTTGACAAAGAAATTGTCATCATTGAGCAAAAGGTCATCGGAGTTGAATGTTTCACGATTGAATTCATCAAAAAGGGATGAGGGAGTTTGGACCAAAAATGTGCTAGATGCCAGAGATGTAAAAGTTTCGTTGATTAGCAAGAAACCCAACGGTTCAGTGAAGTTTTATGACGATCAAATTGGGGAGGAGAAAATTAAGAAACCCGAATTTACTGTTCTTAATCATCCTGGTCTTGGCAAAGTACCAAAGGCTATAGAAGGAGAACAAGTTGCGGCAGGATGGCCAGCTTGGCTATCTTCTGTTGCTGGCGAAGCTATCAAGGGATGGATACCTCGGAGTGCTAATACTTTCGAGAGGTTATATAAAATTGGCCAAGGAACATATAGTTCTGTTTATAAGGCACGTGATGCGACTCACCAAAAGACGGTTGCATTGAAGAAAGTACGCTTTGATAATCTTGATCCTGAGAGTGTCAAGTTTATGGCAAGAGAAATTTTTGTTCTGCGTTCGCTTGACCATCCTAACGTGATAAAGTTAGAGGGCTTGATAACATCCCAGACATCTCGCAGCTTGTACCTTATTTTTGAGTATATGGAACATGATCTTACAGGACTTGCTTCACATCCTGGCATTAAATTTTCAGAACCACAGATTAAGTGCTACATGCAGCAGCTTCTTAGCGGATTGGATCATTGTCATAGTCATGGTGTCCTCCACCGAGACATAAAGGGGTCAAATCTTCTCATTGACAATAATGGCATCTTAAAGATTGCAGATTTTGGTTTGGCAAGCTTCTTTGACCCTCATCACAGTATTCTATTGACCAGCCGAGTGGTGACTCTTTGGTATCGGCCTCCAGAACTTTTACTTGGAGCATCTCATTATGGTGTTGCAGTGGATTTGTGGAGCACTGGTTGCATACTGGGGGAACTATATTCTGGCAGGCCCATATTGCCTGGAAAAACAGAGGTTGAGCAATTGCATAGGATTTTTAAGCTTTGTGGCTCACCATCTGAAGATTACTGGCTTAAATTGCGGTCGCCACACTCAACAGTATTCAAGCCTCCACACCATTATAGACGTTGTGTTGCTGAAACATTCCAGGAATATCCACCTGCTGCTGTGAGGCTAATAGATACCCTACTTTCCATTGATCCTGCACATCGAGGAACTGCAGCTAGTGCTTTAAAAAGTGAGTTCTTTACCATGGAACCCCTTGCATGTGATCCTTCAACTTTACCAAAATATCCTCCCAGCAAAGAGATTGATGCTAAGTTGCGAGATGAAGCAACTAGAAGGCAGAGAGGCGCCGGAGGAAGGGAGCAGAAAGTTGGCGTGGTAGTTAGACCAGAAAAGGGATCTCAGGCACTTGCAGCAAATAACAATGCTGACCCACGCATGTCAATGCAGCAAGGACGTCATTCCAGCTCAAAGAGTCGAAGCGGATTGTTCAATGCTCCCAGAGAATCTGCTTCAGGGTTGTTGGTTTTCCCACATAAACAATCAGACAATGTTAAGGAAATGGAAAATAATTTCTCTGGTCATCTGTTTAAGAGGCCATCACATTCAGGTCCATTGGTTCAGGGTCCTGGCTGGTTAAAGGTTGGGAAGGACATGGATGAGCAGCATCTTGGTTCAAACAGAGTGAACCTGCCAAAACTATCAGGTTTAGTTACATCTAGGACTTCAATGTCTGAAGATCAAGAGGAAAAATCACATTCCTCACAACCCAGAGAAACAGTCGATGTACGAAAATCTGTTGAGTCAACTAGTGGATCAGAGTTAAGAAGAAGGCAGGCTCAAAAACACGAGTCTCAACGAATGGATCTGTGTCATGTAGAACATGGGAGAACCCCCACTAAAGAATCAACTCCGGAAGGGTATGGCAGAGGAAACAAGATCTATCTTTCTGGTCCATTGGTGGTATCATCAAGCAACATGGATCAGATGCTCAAAGAACATGATAGAAAGATCCAGGAATATTCAAGACGTAGAATTGACAAGTCAAGAGGTGAAAAAGTTCGTGGGAAGAAAAAGTAG 2091 0.4319 MGCICSKTSAVEDSREGLTKKLSSLSKRSSELNVSRLNSSKRDEGVWTKNVLDARDVKVSLISKKPNGSVKFYDDQIGEEKIKKPEFTVLNHPGLGKVPKAIEGEQVAAGWPAWLSSVAGEAIKGWIPRSANTFERLYKIGQGTYSSVYKARDATHQKTVALKKVRFDNLDPESVKFMAREIFVLRSLDHPNVIKLEGLITSQTSRSLYLIFEYMEHDLTGLASHPGIKFSEPQIKCYMQQLLSGLDHCHSHGVLHRDIKGSNLLIDNNGILKIADFGLASFFDPHHSILLTSRVVTLWYRPPELLLGASHYGVAVDLWSTGCILGELYSGRPILPGKTEVEQLHRIFKLCGSPSEDYWLKLRSPHSTVFKPPHHYRRCVAETFQEYPPAAVRLIDTLLSIDPAHRGTAASALKSEFFTMEPLACDPSTLPKYPPSKEIDAKLRDEATRRQRGAGGREQKVGVVVRPEKGSQALAANNNADPRMSMQQGRHSSSKSRSGLFNAPRESASGLLVFPHKQSDNVKEMENNFSGHLFKRPSHSGPLVQGPGWLKVGKDMDEQHLGSNRVNLPKLSGLVTSRTSMSEDQEEKSHSSQPRETVDVRKSVESTSGSELRRRQAQKHESQRMDLCHVEHGRTPTKESTPEGYGRGNKIYLSGPLVVSSSNMDQMLKEHDRKIQEYSRRRIDKSRGEKVRGKKK 696
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele12g0484 696 MobiDBLite consensus disorder prediction 666 696 - -
Lele12g0484 696 PANTHER CELL DIVISION PROTEIN KINASE 132 423 - -
Lele12g0484 696 MobiDBLite consensus disorder prediction 666 686 - -
Lele12g0484 696 FunFam probable serine/threonine-protein kinase At1g54610 121 216 - -
Lele12g0484 696 ProSitePatterns Protein kinases ATP-binding region signature. 140 163 IPR017441 GO:0005524
Lele12g0484 696 Gene3D Transferase(Phosphotransferase) domain 1 217 456 - -
Lele12g0484 696 SMART serkin_6 134 418 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele12g0484 696 MobiDBLite consensus disorder prediction 472 503 - -
Lele12g0484 696 MobiDBLite consensus disorder prediction 581 638 - -
Lele12g0484 696 Gene3D Phosphorylase Kinase; domain 1 121 216 - -
Lele12g0484 696 MobiDBLite consensus disorder prediction 531 652 - -
Lele12g0484 696 SUPERFAMILY Protein kinase-like (PK-like) 128 421 IPR011009 -
Lele12g0484 696 MobiDBLite consensus disorder prediction 565 580 - -
Lele12g0484 696 CDD STKc_CDK9_like 134 418 - -
Lele12g0484 696 ProSiteProfiles Protein kinase domain profile. 134 418 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele12g0484 696 MobiDBLite consensus disorder prediction 447 504 - -
Lele12g0484 696 FunFam probable serine/threonine-protein kinase At1g54610 217 458 - -
Lele12g0484 696 ProSitePatterns Serine/Threonine protein kinases active-site signature. 254 266 IPR008271 GO:0004672|GO:0006468
Lele12g0484 696 Pfam Protein kinase domain 135 418 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele12g0484 Lele-ChrLele12 12821863 12826793 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele12g0484 126 459 Core Cell Cycle Gene Families AT5G10270 48.857 5.01e-109 338
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Lele12g0484 Pkinase 9.4e-67 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele09g0849 09 6808986 6814797 Lele12g0484 12 12821863 12826793 hybridization
Lele10g0780 10 6200221 6205471 Lele12g0484 12 12821863 12826793 hybridization