Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele12g0475 ATGAAGATTCTATATAGGATTTGTTTTCCTATTCTTATAATCGGGAAGATTAATCCTGATTCTCACATTGAACGCTCATACTTGTCAGATTCTGGCATTCGAGCTAACTCGTTGTGTGAAACAAAAATAATGGCCTTAGATTTGCAGCTAGAGGATTCTGCAGCACAATCTGATGCTTCTGGAGACAAATCTTGTTTGGAAAAGTGGAATTCTGCTCCTGGAGCCATTGCAGATTGTAATAGGGATGCTTCTGGTGACTTTGAATGCAATATCTGCTTGGATTCCTTGCATGATCCAGTATTAACTCTTTGTGGTCATCTCTTTTGCTGGCCCTGCATTTACAAATGGCTCTATTCTAGTAATGTTTCTTCTCAAAAATGCCCAGTATGCAAATTAGAAATCTCTCAATCCTCCCTGGTTCCGGTGTATGGACGAATCCAAATCACAACACCTTCCGAAGGCAAGAACTCTCACAATGAAGGGACCGCCATACCTCCAAGACCTCGCCGTGGTCCCATGTCAGTTCATGACTTACCAAGATCATATAACAGTGTAGCCGCAGCTCATGACTCGCAAAGATCATATGATGCCAGAACTGCTTCCCAACCAGCTACTCAGTTTCACCAATTCCATTATCCTTATCAGACTCAACAGTTCAATGCATTTGACACAACACATGGAGTTTTTGGTCAGATGGTATATGCTAGAGTGTTGGGTAGCCAGTTGACAAACATGTACGCTTCTGATTCGTATGGTCTCGCAGTGAACAACAACAACAATCCGAGGGTGAGAAGGCATTTGATTCAAGTAGATAAATCACTCAGCAGAATCTGCTTATTCCTCTTCTGCTGTACAGTTCTGTGTCTTCTCTTGTTCTGA 879 0.4209 MKILYRICFPILIIGKINPDSHIERSYLSDSGIRANSLCETKIMALDLQLEDSAAQSDASGDKSCLEKWNSAPGAIADCNRDASGDFECNICLDSLHDPVLTLCGHLFCWPCIYKWLYSSNVSSQKCPVCKLEISQSSLVPVYGRIQITTPSEGKNSHNEGTAIPPRPRRGPMSVHDLPRSYNSVAAAHDSQRSYDARTASQPATQFHQFHYPYQTQQFNAFDTTHGVFGQMVYARVLGSQLTNMYASDSYGLAVNNNNNPRVRRHLIQVDKSLSRICLFLFCCTVLCLLLF 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele12g0475 292 ProSitePatterns Zinc finger RING-type signature. 104 113 IPR017907 -
Lele12g0475 292 CDD RING-HC_AtRMA_like 87 131 - -
Lele12g0475 292 SMART ring_2 89 130 IPR001841 -
Lele12g0475 292 SUPERFAMILY RING/U-box 83 143 - -
Lele12g0475 292 Pfam Zinc finger, C3HC4 type (RING finger) 88 130 - -
Lele12g0475 292 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 45 148 IPR013083 -
Lele12g0475 292 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 52 289 IPR045103 GO:0005783|GO:0006511|GO:0061630
Lele12g0475 292 MobiDBLite consensus disorder prediction 149 176 - -
Lele12g0475 292 ProSiteProfiles Zinc finger RING-type profile. 89 131 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele12g0475 Lele-ChrLele12 12721620 12723573 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele12g0475 82 292 C3H Transcription Factor Family AT4G28270 38.565 2.44e-44 147
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele31g1017 31 17192777 17201688 Lele12g0475 12 12721620 12723573 CCT
Lele32g0506 32 3164003 3171520 Lele12g0475 12 12721620 12723573 CCT
Lele29g0530 29 3222159 3223013 Lele12g0475 12 12721620 12723573 CCT
Lele12g0475 12 12721620 12723573 Lele12g0475 12 12721620 12723573 ECH
Lele09g0857 09 6868350 6871529 Lele12g0475 12 12721620 12723573 hybridization
Lele10g0788 10 6258608 6259357 Lele12g0475 12 12721620 12723573 hybridization