Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele12g0463 ATGGCCTCCCCAACCCTCATTACGCCAACTTCCACCCCAAAATCACTCCCTCCTACTAAGCCCAAATCCCCCATTATGGCCGCCACCGCCTCCTCCTCCACCATGAACGCCACCCAGCCCCGCCGCCGTGAATTCCTCTCCATCGCCTCCTCCGTCACTTCCATCTTATGCCTCAACCTCAACCCTCTGCTGCCAGCACTAGCTGCTTCAGACGAAGAATATGTGAAGGAAACAGTGGAAGTGATCAATAAGGTGAGAACCACCATTACAATGGACAAGAAGGATCCCAATGTTGCAGATGCGGTGGCTGAGTTGAGAGAGACGTCGAATTCCTGGGTGGCTAAGTACCGGAGAGAGAAGGCTCTGTTGGGAAGGGCTTCGTTTCGTGATATGTACTCAGCACTGAATGCAGTTTCAGGGCATTATATTAGTTTTGGACCCACTGCTCCAATTCCTGCAAAACGCAGGGCCAGGATCTTGGAGGAGGTCGACACTGCTGAGAAGTCTCTGAAAAGAGGAAGGTGA 525 0.5257 MASPTLITPTSTPKSLPPTKPKSPIMAATASSSTMNATQPRRREFLSIASSVTSILCLNLNPLLPALAASDEEYVKETVEVINKVRTTITMDKKDPNVADAVAELRETSNSWVAKYRREKALLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRRARILEEVDTAEKSLKRGR 174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele12g0463 174 Gene3D Photosystem II Pbs27 69 174 IPR038450 -
Lele12g0463 174 MobiDBLite consensus disorder prediction 1 38 - -
Lele12g0463 174 Hamap Photosystem II lipoprotein Psb27 [psb27]. 50 170 IPR025585 GO:0009523|GO:0010206|GO:0010207
Lele12g0463 174 FunFam Photosystem II lipoprotein Psb27 69 174 - -
Lele12g0463 174 PANTHER PHOTOSYSTEM II REPAIR PROTEIN PSB27-H1, CHLOROPLASTIC 69 170 IPR025585 GO:0009523|GO:0010206|GO:0010207
Lele12g0463 174 Pfam Photosystem II Pbs27 46 170 IPR025585 GO:0009523|GO:0010206|GO:0010207
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele12g0463 Lele-ChrLele12 12546963 12547487 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele12g0463 12 12546963 12547487 Lele29g0530 29 3222159 3223013 CCT
Lele12g0463 12 12546963 12547487 Lele31g1016 31 17185750 17186604 CCT
Lele12g0463 12 12546963 12547487 Lele12g0463 12 12546963 12547487 ECH
Lele09g0873 09 6994984 6995502 Lele12g0463 12 12546963 12547487 hybridization
Lele10g0801 10 6410236 6410760 Lele12g0463 12 12546963 12547487 hybridization