Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele12g0429 ATGTCTTTGGGGATTCCATTTGCAGGAGTAACTTCAACAAAGTTCACAATTGTTAACAAATGTAACTACAAAGTATGGCCAGGAATTAATTCAGGTGCTTCCAGCAATCCATTATCAACCAGCGGTTTTGTTCTTAAAACAGGCGAGTCTAGGATCATCTCTGCGTCCACTTCTTGGAATGGGCGCATTTGGGGTCGAACTCAATGTACACAAGACTCCACCGGAAACTTCTCCTGTGTTACCGGTGACTGTGGCTCCGGGAAGCTTGAATGCGAAGGCAGGGGAAGTATACCGCCTACGACGTTGATAGAATTTTCTTTAGTCCAAAGCCTTGATTTTTATGACGTGAGCTTGGTAGGTGGATTCAATGTGCCTGTAGCGGTTGTTCCTCAAGGTGGTTGTGGAGCCTGCAAGAGCACATATTGTTTGGCAGATATGATCAGCCTATGCCCTTCAGAGCTGAGGGTAATGAGCAAAGATGGAAAAGTGGTGGCATGCAAGGGCCCTTGTGAGGCAGATGACTCATTGCAAGCTTGTGGCAACAATGCTTCCCGGCCCTCCTCTTATGCACAGCTATTCAAGAGCGTTTGCCAACGTGCCTATAGTTATCCACAAGATGATCAACTAAGCACATTCACATGTCAAGGTGCAGATTATAATATCACCTTTTGTGAATCCCCCTACACAAATTTGGACACATCTGGCGCCTCATCGTGCACGGAAACCATCACGTCATCTCACTACATCAAGGATCCAGATACAATAAGATCCAGAGGGGGTTTGTTCACACTAGGGTTCTTCAGTCCTGAAAATTCTACGAATCGCTATGTGGGAATTTGGCACATGTCCAATTCCACTATTGTATGGGTGGCTAACAGAAATCGACCATTTAGGGATACTTCAGGAATTGTTAGGATATCTGAAGATGGAAATCTCGTGGTATTAGATGGGAAAAACCAAACCATTTGGTCATCAAATGTGTCAAATATTTCATCTCCTACTAGTTGGCAGATTTTAGATTCTGGAAACCTTGTCCTAATGGATACCTCGATGAAAACTGTATGGCAAAGTTTTGAGCATCCTTCAGATACATTGTTGCCAGGCATGAAAATTACCAGAAACAAAAGAACAAGGGAGACACAGAAGTTAACAGCGTGGAAAAATGGGTCTGATCCATCCCTTGGCAATTTCTCTCTGAGTCTGGAACAGCTAAATTTTGCCGAATTATTCATATGGAATGCAACTAGCCCCTATTGGCGTAGTGGTCCATGGAATGGCCTTACAACAGTCCTCAAGATGAGTTCCGAGTATGATAATGGTGCTGAAGAGATGGTTGTGAGCTTATCGAATGGATCTGACATCAAAGAGATGGTTGTTCTGAATTCAAAAGGAAAGTTATTACATAAACAATGGGATGATGCTAAGAGGCAATGGAAAGAAACCAATCTTGTTCAAAATTCAGATTGTGATGTTTATGGTATATGTGGGGAATTTGGGATTTGCAATTCAAAGAGTGTGCCAATCTGCAGTTGTTTGCATGGGTTTGAACCAAGAAACAAGGAGGAATGGAACAGACAAAATTGGACAGGTGGTTGTGTTAGTAAATTAACTCTGCAATGTGAGAAAGTGAAAAATGGGAGTTCCAATGGAAAGGAAGATACGTTTTACCATCTGCAAAATGTTAAAGTACCAGACTTTGGAGAACAATCATCTAATTCAGAAGACAAGTGCAGAATCCAGTGCTTGGAGAACTGCACTTGTAAAGCATATTCATATAATTCAGTACTTGGATGTATGACTTGGAAAGAAAATTTAATTGACATACAACAGTTCTCAAATGGAGGAATTGACCTATATATCCGAGCAACTGATAAGAAGAGACCTAGGACATTTATCATTATCATCATTGCAGTAATAGGAGCTATCATTATCAGTGTCACTTGTGCATACTTCTTATGGAAATGGAAGGCAAAACAAGCAGCAGGAAAATGGAAAAGCAAACGGTTCTTGTTAAAAGGGCGTGGTGCAAATGAAGACAAAACAAATGGCAATATTATTGAAAAATTGTCACAAGTTAAACTCCAGGAGGTATTGGTTTTTGATTTTGAAAAGGTTGCAATGGCTACAAACAACTTTCAATTGACCAATAAACTTGGGCAAGGCGGTTTCGGTCCAGTCTATAAGGAGTCTTTGTTACAGTTATTTGAGTTTTCTCTATGTGAAGATCATGCTAACACAGTTAGAGTTGTTGGAACCTATGGCTATATGTCTCCAGAATATGCAATGGAAGGATTATTTTCAGAGAAGTCAGACGTGTTTAGCTTTGGAGTTTTACTATTAGAGATTATAAGTGGAAGAAAAAACTCAAGCTTTCATAATAACGAGCACTCTCTTAGCCTGCTAGGATTTGCATGGAAACTATGGAATGAAGACAACATTGTACAGCTAATAGATCCTGAAATATCTAGTCAAAACCTGGAGAAGGATATATTCATGTGCATACACATAGGACTTCTATGTGTACAAGACCTTGCCATAGAGAGGCCAAGCATGAGCATTGTAGTTTCTATGCTTAATAGTGAGATTCTCAATCTTCCTCCTCCAAGGCAACCTGCATTCATCCAATGGCAGAGTATATTGAATCAATTGACCGTAGAAGAAAATCAAAGATTATTTTCCAACAACCAAGTTAGTATTAGTGACATACAGGGCAGATAG 2718 0.4036 MSLGIPFAGVTSTKFTIVNKCNYKVWPGINSGASSNPLSTSGFVLKTGESRIISASTSWNGRIWGRTQCTQDSTGNFSCVTGDCGSGKLECEGRGSIPPTTLIEFSLVQSLDFYDVSLVGGFNVPVAVVPQGGCGACKSTYCLADMISLCPSELRVMSKDGKVVACKGPCEADDSLQACGNNASRPSSYAQLFKSVCQRAYSYPQDDQLSTFTCQGADYNITFCESPYTNLDTSGASSCTETITSSHYIKDPDTIRSRGGLFTLGFFSPENSTNRYVGIWHMSNSTIVWVANRNRPFRDTSGIVRISEDGNLVVLDGKNQTIWSSNVSNISSPTSWQILDSGNLVLMDTSMKTVWQSFEHPSDTLLPGMKITRNKRTRETQKLTAWKNGSDPSLGNFSLSLEQLNFAELFIWNATSPYWRSGPWNGLTTVLKMSSEYDNGAEEMVVSLSNGSDIKEMVVLNSKGKLLHKQWDDAKRQWKETNLVQNSDCDVYGICGEFGICNSKSVPICSCLHGFEPRNKEEWNRQNWTGGCVSKLTLQCEKVKNGSSNGKEDTFYHLQNVKVPDFGEQSSNSEDKCRIQCLENCTCKAYSYNSVLGCMTWKENLIDIQQFSNGGIDLYIRATDKKRPRTFIIIIIAVIGAIIISVTCAYFLWKWKAKQAAGKWKSKRFLLKGRGANEDKTNGNIIEKLSQVKLQEVLVFDFEKVAMATNNFQLTNKLGQGGFGPVYKESLLQLFEFSLCEDHANTVRVVGTYGYMSPEYAMEGLFSEKSDVFSFGVLLLEIISGRKNSSFHNNEHSLSLLGFAWKLWNEDNIVQLIDPEISSQNLEKDIFMCIHIGLLCVQDLAIERPSMSIVVSMLNSEILNLPPPRQPAFIQWQSILNQLTVEENQRLFSNNQVSISDIQGR 905
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele12g0429 905 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 238 850 - -
Lele12g0429 905 Gene3D Thaumatin 13 224 IPR037176 -
Lele12g0429 905 Pfam S-locus glycoprotein domain 419 518 IPR000858 GO:0048544
Lele12g0429 905 PRINTS Pathogenesis-related protein signature 14 26 IPR001938 -
Lele12g0429 905 PRINTS Pathogenesis-related protein signature 62 73 IPR001938 -
Lele12g0429 905 PRINTS Pathogenesis-related protein signature 215 224 IPR001938 -
Lele12g0429 905 PRINTS Pathogenesis-related protein signature 112 128 IPR001938 -
Lele12g0429 905 SUPERFAMILY Osmotin, thaumatin-like protein 13 224 IPR037176 -
Lele12g0429 905 ProSitePatterns Thaumatin family signature. 75 91 IPR017949 -
Lele12g0429 905 Gene3D Transferase(Phosphotransferase) domain 1 692 864 - -
Lele12g0429 905 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase B120 737 863 - -
Lele12g0429 905 Pfam D-mannose binding lectin 286 387 IPR001480 -
Lele12g0429 905 Pfam PAN-like domain 550 608 IPR003609 -
Lele12g0429 905 ProSiteProfiles PAN/Apple domain profile. 540 623 IPR003609 -
Lele12g0429 905 CDD B_lectin 246 361 IPR001480 -
Lele12g0429 905 Gene3D - 235 359 IPR036426 -
Lele12g0429 905 Pfam Protein tyrosine and serine/threonine kinase 752 804 IPR001245 GO:0004672|GO:0006468
Lele12g0429 905 SUPERFAMILY alpha-D-mannose-specific plant lectins 277 426 IPR036426 -
Lele12g0429 905 SMART ntp_6 550 622 IPR003609 -
Lele12g0429 905 FunFam THAUMATIN-LIKE PROTEIN 1 13 225 - -
Lele12g0429 905 SUPERFAMILY Protein kinase-like (PK-like) 743 891 IPR011009 -
Lele12g0429 905 ProSiteProfiles Thaumatin family profile. 12 224 IPR001938 -
Lele12g0429 905 CDD PAN_AP_plant 537 621 - -
Lele12g0429 905 CDD TLP-PA 14 224 - -
Lele12g0429 905 SMART blect_4 246 361 IPR001480 -
Lele12g0429 905 SMART tha2 15 225 IPR001938 -
Lele12g0429 905 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 236 358 - -
Lele12g0429 905 Pfam Thaumatin family 19 224 IPR001938 -
Lele12g0429 905 ProSiteProfiles Bulb-type lectin domain profile. 240 359 IPR001480 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele12g0429 Lele-ChrLele12 12026882 12030630 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele12g0429 739 867 Receptor kinase-like Gene Family AT5G38280 29.496 4.45e-09 58.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Lele12g0429 Thaumatin 3e-62 CL0293