Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele12g0407 ATGACAGGGCGAGCATCATCATCTACTTCCGTTCACTATTATTGGACTTATGATGTTTTTATCAACTTTAGGGGTGAAGACACTCGCTATGGTTTCACAGGAAATCTGAATCATGCTCTCACTAAAAAGGGAGTTCGCACCTTCTTTGATGATAAAGAAATAAGAAAAGGGGACGAAATTACACCAACACTTCTCAAAGCAATCCAAGAATCAAGAATGGCCATTATTGTATTTTCTCAGAACTATGCTTCTTCAACATTTTGCCTTGACGAACTTGTCCAGATCTATCAATGTATTAAGCAAAAGGGTCGGCTAGTTTGGCCAATTTTTTACGATGTTGAACCTTCAGAAGTGCGGCGTCAAAAAGGGAAGTATGGTCAAGCGTTGGTTATGCATACAAATAACTTAAGGGCCAGTGAAGAGAAGATTCAAAGTTGGAAGCTCGCACTATATGAAGTATCTAATATTTCTGGAACACATTTCAATACTAGGCATGATTATGAATATGAGTTTGTTGAAAGGATTGTGGGAGAAATATTTCGCATAATCAATAGAACTCCTTTACATATTGCTGAATATCCAGTTGGATTAGAGTCTCGTTTGCAAGAAATAAACTCTCTATTGGAGCTTGAGTTAAAAGGAGAGGTCATTATGGTAGGAATTTGTGGAATGGGAGGAGTGGGTAAAACAACAATAGCACGTGCTTTGTATAACTCAGTAGCTGATAATTTTGAAGGCTTGTGCTTTCTCCATGATATCAAAGAAAACCAAAAGAAACTTGGTTTACAACAAATGCAAGAGAGAATGCTATCAAAGCTTCTAGGAGTGGAGATGAAAATTGATGACGTTAATGAAGGAATTGCAATAATAAAAGAGAGACTTAAACAAAAGAAAATTCTGTTGATTCTTGATAATGTTGAAGAACAAGAGCAATTACGATACTTTGCTGGCCATTGTGATTGGTTTGGTTCTGGGAGTAGAATCGTTATAACGACAAGGGATAAACATTTGCTTGTAAGACATGGGGTTGAAAGAAAATATGAGATGGAGGCATTCAATTATGAAGAATCACTTGAATTGTTAAGTTGGAATGCCTTTAAAAATGTGCAAGTTGATCCAAGTTACAAAGAAGTTGTGGATCGTGTGATATGCTATGCCCAAGGTCTTCCTTTAGCCCTTGAAGTAGTAGGCTCTTACTTGTGTGGTATGAGAATAAGGGAGTGGGAATCTGCGTTAAATGTATACGAAAGAATCCCTCATGAAGACATTCAAAATATATTAAAAACAAGTTATGATGGCTTGGAACAAGTTGAAAAAGAAATTTTCCTTGACATTGCTTGCTTCTTCAAAGGAAGTAAATTAGAATATGTTGTAGATATGGTGAAACATGCTCATGGTTTTGATCCGCGTTATGGTATTCAAGTGCTGGTTAACAAATGCCTCATAAAGATTGAGGAAGATTGGTATAGTTATAAGTTCAATTGTATTGAAATGCATGATTTAATACAAAAAATGGGGCAAGAAATTGTTCGTCAAGAATCACCATATGAGGCAGGAAAACGCAGTAGATTGTGGTTCCATCAAGATACAATTGATATTTTGGAAGAAAATGCCGGTACTGATAAAGTTAGGAGCATCATCATTCAAGACAAATCGAAGGAATGCATAGAAATAGATTGGGATGGAGAAGCCTTCAAGAATATGAAAAATCTCAAAATTCTTATTCTTGAGAATGTTATATTTTCTGAAAGCCCAAAATATCTCCCAAATAGTTTAAAAGTGCTGAAATGGAAGCGATACCCTGGGTCATTTTTGCCATGTGATTTTTGTCCAAAGAAGCTTGTTGTGTTGGATTTGGCACATGGCTTTTTAAATTCACTGGAAATATTCAAGAAGAGTAAAACACTAGGTTGCACATCATTGAGTTCGGAGTCTAGAAACTTACTTTTCACTGAGGAATTACTCAGGTCTGCACTCAATAATACTGACGACTGCGTGTTTTTTAATCGTCCGGACATAGTTTTTGGTATATCGGGATCAAGCATTAATATTCCCGAATGGTTCAGCCACCAATGTAGAGGATCAAGTATTTCTTTCTGGTTTCGTAACGATTTCCCTACAGCATCTCTCTGTTCAATTTTTAGATCAACAAAACATGTTCTAGGAGACAATAATTTTACACTTAATTATGGAGTGATTGCCTTACGAGATGATTATATGGATGCTGTGGTGTTAATAAATGGCCAACAAGTAACTAAGCGCAGATGGCATAAAGCTTCTCCAAATGATGATGTAATGGTTGTGTGTGATCTACATTTGGATCGTTCTGAATATTACAACATGAAATACGCATGTCGAGAAAATGAGTGGAATAATGTGAAGATTGTGTATCGACCCAAGTCCAGGTACTATGTTATTGACAAGATCGGAGTCTATGTAATCACACAAGATGGAAGCATGGAGAATATTCGATTCACTGATCCTTATGAAAGATTGAATTCAAGGAATCTTGACCAAGGTTTAAGCTAG 2529 0.3638 MTGRASSSTSVHYYWTYDVFINFRGEDTRYGFTGNLNHALTKKGVRTFFDDKEIRKGDEITPTLLKAIQESRMAIIVFSQNYASSTFCLDELVQIYQCIKQKGRLVWPIFYDVEPSEVRRQKGKYGQALVMHTNNLRASEEKIQSWKLALYEVSNISGTHFNTRHDYEYEFVERIVGEIFRIINRTPLHIAEYPVGLESRLQEINSLLELELKGEVIMVGICGMGGVGKTTIARALYNSVADNFEGLCFLHDIKENQKKLGLQQMQERMLSKLLGVEMKIDDVNEGIAIIKERLKQKKILLILDNVEEQEQLRYFAGHCDWFGSGSRIVITTRDKHLLVRHGVERKYEMEAFNYEESLELLSWNAFKNVQVDPSYKEVVDRVICYAQGLPLALEVVGSYLCGMRIREWESALNVYERIPHEDIQNILKTSYDGLEQVEKEIFLDIACFFKGSKLEYVVDMVKHAHGFDPRYGIQVLVNKCLIKIEEDWYSYKFNCIEMHDLIQKMGQEIVRQESPYEAGKRSRLWFHQDTIDILEENAGTDKVRSIIIQDKSKECIEIDWDGEAFKNMKNLKILILENVIFSESPKYLPNSLKVLKWKRYPGSFLPCDFCPKKLVVLDLAHGFLNSLEIFKKSKTLGCTSLSSESRNLLFTEELLRSALNNTDDCVFFNRPDIVFGISGSSINIPEWFSHQCRGSSISFWFRNDFPTASLCSIFRSTKHVLGDNNFTLNYGVIALRDDYMDAVVLINGQQVTKRRWHKASPNDDVMVVCDLHLDRSEYYNMKYACRENEWNNVKIVYRPKSRYYVIDKIGVYVITQDGSMENIRFTDPYERLNSRNLDQGLS 842
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele12g0407 842 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 17 649 IPR044974 GO:0006952
Lele12g0407 842 Gene3D - 187 344 IPR027417 -
Lele12g0407 842 Gene3D - 352 435 IPR042197 -
Lele12g0407 842 FunFam Disease resistance protein (TIR-NBS-LRR class) 13 185 - -
Lele12g0407 842 ProSiteProfiles TIR domain profile. 15 183 IPR000157 GO:0007165
Lele12g0407 842 SUPERFAMILY Toll/Interleukin receptor TIR domain 7 158 IPR035897 -
Lele12g0407 842 Pfam TIR domain 17 181 IPR000157 GO:0007165
Lele12g0407 842 SUPERFAMILY L domain-like 558 630 - -
Lele12g0407 842 SMART till_3 16 156 IPR000157 GO:0007165
Lele12g0407 842 Gene3D - 12 186 IPR035897 -
Lele12g0407 842 Pfam NB-ARC domain 207 435 IPR002182 GO:0043531
Lele12g0407 842 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 184 445 IPR027417 -
Lele12g0407 842 PRINTS Disease resistance protein signature 218 233 - -
Lele12g0407 842 PRINTS Disease resistance protein signature 293 307 - -
Lele12g0407 842 PRINTS Disease resistance protein signature 566 582 - -
Lele12g0407 842 PRINTS Disease resistance protein signature 386 400 - -
Lele12g0407 842 SUPERFAMILY "Winged helix" DNA-binding domain 422 534 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele12g0407 Lele-ChrLele12 11246287 11251963 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele12g0407 17 643 WRKY Transcription Factor Family AT4G12020 28.281 5.34e-62 226