Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele12g0397 ATGGTTCAAAACAAAAGCTCCATCATTTTGTCCTCCACAATATCACACAACATTCTAGAGAGATATATATTGATGGGGAGAACATCAGAGAGTGAAGAAAGTAGTGGTTTGAAGAAGGGGCCATGGACAGCAGAAGAAGATAGAATACTTGTAGATTACATTGAGAAACATGGACATGGAAGCTGGAGAGCACTTCCAAAGCTGGCAGGATTGAACAGATGTGGAAAAAGTTGCCGGCTGAGGTGGACTAATTATCTAAGGCCAGACATCAAAAGAGGAAACTTCTCTGAGCAAGAAGAACAACTCATCATCAATTTGCATGCAGTCCTTGGCAACAAGTGGTCCACCATAGCAGGTCATCTACCAGGGAGAACTGACAATGAAATAAAGAACTTTTGGAATACTCATTTGAAGAAGAAGCTCATGCAAATGGGGTTAGACCCAGTGACCCACCGTCCTAGATCTCATCAACTTAATCTTCTCTCCAATCTCCAACACTTGCTATCTTCTCTCACGACAATTAATAATCCTAATCCTCCTAATAATCATCATCATTGGGACAATATTCTTAATACTATTCGAACTTTGTCCCCTTCGCAACTAACTAAACTCCATTTGCTACACAACTTACTTAAAGTCCTCACGACAACTACTACTGCTACTATGAGCCTGGCTCCAAGTAATCTCGAGCCACTTGTCGACCCCTCGATGATCGATCATCTTCTCTTACAAGAAAATCAAACCGTTGGAAATTTTCCTTCTCTTTCACATTTGTCAAATGTGGAGGGTCTTTATAATCATCATCATCAGCATCTACCACAAGCTGTAGTGAGTGATCATGATCAGCTTCTTAAGATAATGCCATATTCGGCTGATCCGGCAGCATCTTCTTCTAGTTCGCTTCCCAATCTGGTTTTTCCCACACCTGATTGCTCACCATCATCACCATCTTTTAGCAAAATGAAAAACAAGGTAAACCAAAATGATAGCACTAATATTAATCCTCCTTCTTCCACTTCAACATTAACCTTTGATACTTTGGGAGATTTTATGGGTGAGCAAGCAAGTGAAGATTACTGGAAACATCTTATAGGGCAAGAATCTAACCAGCCATGGGCAATCTCATAA 1128 0.4051 MVQNKSSIILSSTISHNILERYILMGRTSESEESSGLKKGPWTAEEDRILVDYIEKHGHGSWRALPKLAGLNRCGKSCRLRWTNYLRPDIKRGNFSEQEEQLIINLHAVLGNKWSTIAGHLPGRTDNEIKNFWNTHLKKKLMQMGLDPVTHRPRSHQLNLLSNLQHLLSSLTTINNPNPPNNHHHWDNILNTIRTLSPSQLTKLHLLHNLLKVLTTTTTATMSLAPSNLEPLVDPSMIDHLLLQENQTVGNFPSLSHLSNVEGLYNHHHQHLPQAVVSDHDQLLKIMPYSADPAASSSSSLPNLVFPTPDCSPSSPSFSKMKNKVNQNDSTNINPPSSTSTLTFDTLGDFMGEQASEDYWKHLIGQESNQPWAIS 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele12g0397 375 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 34 86 IPR017930 -
Lele12g0397 375 FunFam MYB-related transcription factor 38 91 - -
Lele12g0397 375 ProSiteProfiles Myb-like domain profile. 34 86 IPR001005 -
Lele12g0397 375 ProSiteProfiles Myb-like domain profile. 87 137 IPR001005 -
Lele12g0397 375 FunFam Transcription factor MYB39 94 155 - -
Lele12g0397 375 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 87 141 IPR017930 -
Lele12g0397 375 SUPERFAMILY Homeodomain-like 36 133 IPR009057 -
Lele12g0397 375 Gene3D - 94 141 - -
Lele12g0397 375 SMART sant 91 139 IPR001005 -
Lele12g0397 375 SMART sant 38 88 IPR001005 -
Lele12g0397 375 MobiDBLite consensus disorder prediction 307 340 - -
Lele12g0397 375 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 25 266 - -
Lele12g0397 375 CDD SANT 94 137 IPR001005 -
Lele12g0397 375 CDD SANT 41 86 IPR001005 -
Lele12g0397 375 Pfam Myb-like DNA-binding domain 39 86 IPR001005 -
Lele12g0397 375 Pfam Myb-like DNA-binding domain 92 137 IPR001005 -
Lele12g0397 375 Gene3D - 38 91 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele12g0397 Lele-ChrLele12 10611539 10614710 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele12g0397 25 364 MYB Transcription Factor Family AT5G16770 46.667 1.47e-88 268
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lele12g0397 Myb_DNA-binding 5.6e-16 CL0123