Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele12g0377 ATGGCCCAGCAGTCATCTAGACTTCAGCGCTTGCTTACTCTCTTGGACACTGGGTCAACCCAAGCAACAAGGTTGACTGCTGCTCGGCAAATTGGGGATATTGCAAAATCTCATCCTCAAGACTTGATCAGTCTGCTAAAGAAGGTGTCTCAATATCTACACAGTAAAACTTGGGATACAAGAGTTGCAGCTGCCCATGCAATCGGGGCTATTGCTGAGAATGTGAAGCACACAAGCTTAAATGAGCTTATTGCTGCTATTGCAACAAAAATGTCTGAAGCTGGGATATCTGGTAGTGTTGAAGATATGTGCGCATGGCCTTATTTACAATCTAAAATTACCGGAAGTGCAATTAGGAGCTTTGACCTCAACAAGGTTCTTGAATTTGGCGCATTATTAGCATCTGGAGGACAGGAGTATGATATAGGAAGTGATAACGTAAAAAACCCAAAGGAGCGGTTGGCTCGCCAGAAGCAAAATCTTCGACGTCGCTTAGGGTTGGATGTGTGCGAACAATTCATGGATATCAGTGATGTGATAAGAGATGAAGATCTTATAGCGTATAAATCAGATTTACGTCCGTATGGAATTGATCATAGAGTTTTTACATCTCATTCTGTACATAACATCCAGAAAATGGTTGCCAATATGGTTCCTAATGTTAAATCTAAGTGGCCAAGTGCAAGAGAACGGAACCTCTTAAAACGTAAAGCAAAAATGAACTCAAAAGACCAAACAAAAGGCTGGCTTGAGGATGGAAGCACAGAGGCATCACTTGCACAAAATTCGACTTCTAAAGGCACATATCCTGAGTCAGTAAATTACAATAAGGCTTTTGTTTATGGTAATCATGATGAAGATGGATTTGATCATGATGAAGATGGGCGGTGGCCTTTCCACATTTTTGTTGAGCAGCTTATTATTGATATGTTTGATCCTGTTTGGGAAGTACGCCATGGCAGTGTGATGGCATTGAGGGAGATTTTAACTCATCAAGGTGCATCTGCTGGAGTATTAAAACCGGACTCACGCTTGGGTGGAGAACTATTTCTTGAATTTGAAGATAAAAATGTTTCAAATTTATTAAAGAGAGATAGGGAGATAGATTTGAATATGCAAATTTCAGGGGATGAGCTTGAGTCAAACTCTAAGAGGCCAAAGCTTGAAGATGTATCATCAACTTCCATGGATGGCAGGAACATTTGCAGCAATGAAGGTGACATTGAAATCAGCATTGGCACTGATACTCTTGGTTGCAATTTGCCTATGGACGGCAGGAATGGACAATTTAATGATAGTTCTGTGTGCTTGGATCTAGAATCTTATTCTGAGGGTTTATGCCATTCATGCAAGGAGCCTACTAATATAGCTGAGCATAAGGATTATTCTGGTGAGGATAAGATTGCATCTGGTAATCTTAATGGGCTTCCTCAGAATTGTGAGCTTGTGAACTTGCTTAATGTGATTAAAAGTTCCTGGCTTCAAAACTACGGATTTCTTCAAGATTGTGTAATACGCTTCTTGTGTGTGTTGTCACTAGATCGGTATGATATTTTCATTCTCTTTGGAGATTATGTCTCTGACCAGGTTGTTGCTCCTGTACGGGAAACCTGTGCGCAAGCATTAGGGGCTGCATTTAAGTACATGCATCCGGCATTAGTAAATGAAACATTAAATATATTGTTGAAAATGCAGTGTAGAGCAGAATGGGAGATTCGTCATGGAAGCCTTTTAGGTATCAAGTATTTAGTTGCTGTGCGGCAGGAAATGCTTCCAGAATTGCTTGGACGTGTTCTTCCTGCATGCAAATTTGGGTTGGAGGATCCAGATGATGATGTCCGAGCAGTTGCTGCGGATTCTTTAATACCAGCTGCAGCTGCAATTGTTGGTTTACAGGGTCAAACTTTGCAGTCAATTATGATGCTATTGTGGGACATTTTGCTTGATTTGGATGACTTAAGTCCATCCACTAGCAGTGTAATGAATCTTCTGGCAGAAATTTATTCTCAGGATGAGATGGTTCCAAAGATGAACAGATCATATGAATTCGGAGATACAGAAATGAGTAATCTAATTGGAGTTGGTGACAGCGGTGGTATTGATCATGACAAAAATCCTTATATGCTATCGATGTTGGCACCACGCTTGTGGCCTTTTATGAGGCATAGCATCACCTCTGTTCGGTTTTCAGCTATTCGCACTTTGGAGAGGCTGCTTGAAGCTGGATACAAGAGAAGCATGTCTGAGCTATGCAGTTCTTCATTTTGGCCTTCTTTTATCCTAGGAGATACCCTTCGTACTGTATTTCAGAATCTGCTGTTGGAATCAAATGAGGCTATATTGCAGTGTTCTGAGAGAGTTTGGAGGCTTCTTGTTCAGTGTCCAGTTGAAGATTTGCAGACGGCTGCAAGATCTTACATGAATTCTTGGATAGAACTTGCATCTACCCCATTTGGTTCAGCATTAGATACCTCAAAAATGTTTTGGCCTGTTACCTTTCCACAAAAAAGTCAATCGAGAGCAGCGGCTAAAATGAGAGCTGTGAAGGTTGAAAATGAATATGGTGGGGATCTTGGCTTGGATTCTACTAAAGGAATTACTCTACAAGAAAGAAATGGAGATGTTTCCATGGGTTCTGTCAAGATTGTTGTTGGTGCTGACATTGATACATCAGTAACTAATACTAGAGTGATAACTGCTACTGCATTAGGAATTTTTGCTTCTAAGCTGCCAGAGGTTTCTATTAAAGATGTGATTGATCCGCTGTGGAATGCTCTTACCTCTTTGTCTGGTGTCCAGCGCCAGGTTGCGTCCATGGTATTTATTTCTTGGTTCAAGGAGATTAAAAGAAGTCAATTATCGGAAAACCTTAAGATTATTCCTGGTGTCCCAAATTATCTCAAAGACTGGCTGCTGGACTTATTGGCATGTTCTGATCCAGCATTCCCGACAAAGGATTCATTTCTTCCTTATGCGGAGCTTTCAAGAACATATTCAAAGATGCGTAGTGAGGCTGGTCAATTGCTTAATGTTATGAAATGTTCTGGTATGTTTGATGACTTATTGTCAACTATGAAAGTTGAGTTGGAGAGCTTGAGTGTGGATGATGCCATTAATTTTGCGTCAAAAGTTCCGGCTCTGTATAATGAAATTGTTGGGAATGAGTCCTTGGGAAGGAACATTATGGATGATATTGAGTCATCAAAACAGAGACTCTTGACAACTTCTGGCTATTTAAAATGTGTTCAGAGCAATTTGCATGTTACGGTTTCATCTGCAGTTGCGGCTGCAGTTGTCTGGATGTCAGAATTTCCTTCACGCCTCACCCCAATTATTTTGCCTTTGATGGCTTCAATAAAACGAGAGCAGGAGGAAATACTGCAAATGCAGTCAGCTGAGGCACTGGCTGAGCTTATGTATCACACTGTTGAACGTAGACCTTGCCCAAATGATAAATTAATTAAGAATATTTGTGTCTTGACTTGTATGGATCCCTCTGAGACACCTCAAGCTGAATTTATTAGATCCATCGATAGTATTGATGACCAAGGTCTCATGTCCTTTGGAACTCCTGGGGTTAAACAGAGATCAAAGGCCCACGTGCTGGTTGGTGAAGATCGATCAAAGGTTGAGGGCTTTATTAGTAGACGTGGATCTGAACTCTCACTGAGGTTTCTATGTGAGCAGTTTGGTGTTTCATTGTTCGATAAGCTTCCTAAGCTGTGGGATTGCCTTACTGAGGTGCTTAAGCCTAGCTCTGTTGGATCTCTTGCTGCTTCTGAAAGAGAATTCATGTTGGTTATTGAGTCTGTCAGCAATCCCCAGACCTTGATTAACAATATTCAGGTGGTACGCACTATTTCTCCCTTCCTGCATGAGGATTTGAAGCCAAAACTGTTGACACTTCTCCCTTGCATTTTCAAATGTGTTAAGCATCCTCATGTTGCTGTTAGATTAGCTGCTTCACGTTGCATTACTTCAATGGCCAGGTCAATGACTTTAAAAGTTATGGGAGCTGTGGTTGAAAATGCTGTCCCTATGTTGGCAGATGCTTCATCAGTTCATGCTCGGCAAGGAGCTGGCATGCTGATTAGCTTTCTTGTTCAGGGTCTCGGTGCGGAGCTGGTCCCTTATGCTCCTATCTTGGTAGTTCCACTTCTTCGGTGTATGAGTGATTGTGATCAGTCCGTTAGACAGAGTGTTACACATAGTTTTGCCACTCTTGTACCTTTACTTCCTTTAGCACGGGGCCTTCCTCCACCTCTTGGTTTAGGGGAGGGTTTATACAGAAACACAGAAGATATAAAATTTTTGGAGCAACTACTTGATAATTCTAATATTGAAGATTATCAGTTGTGCACTGAGTTGAAAGTAACTTTGAGAAGGTATCAGCAGGAAGGTATAAATTGGTTGGCTTTCTTGAAACGTTTCAAGCTTCACGGAATTTTATGTGATGACATGGGGCTTGGTAAAACTCTTCAGGCATCAGCAATTGTGGCATCTGAAATAGCTGAGCATCAAAGTCTGAATGAGAATGAGGAACTTCTGCCATCTTTAATCATTTGCCCATCGACACTGGTTGCACATTGGGCATTTGAGATAGAGAAATATATTGATGTTTCTATTATATCTACTCTTCAATATGTTGGTTCTGCTCAGGAGCGGATGTATGTTAGAGATAATTTCTGTAAGAATAATGTCATCATAACATCATATGATGTTGTCCGTAAAGATATTGATTATTTAGGTCAGCTGCAATGGAATTACTGCATTTTAGATGAAGGACATATAATCAAGAATGCTAAGTCCAAAGTAACTCTCGCTGTAAAGCAGTTGAAAGCCCAACACCGCTTGATATTGAGTGGGACACCAATACAGAATAACATCATGGACTTGTGGTCCCTTTTTGATTTTCTAATGCCAGGATTTCTTGGTACAGAGAGACAGTTCCATGCCACTTATGGAAAACCACTCCTAGCTGCAAGAGATCCCAAGTGCTCTGCTAGGGATGCTGAAGCAGGAGTTCTTGCTATGGAGTCATTGCATAAGCAGGTCATGCCTTTCCTTCTCCGTAGAACAAAGGAAGAAGTCTTGTCTGATCTGCCAGAAAAAATAATTCAAGACAGATACTGTGATTTAAGTCCTGTACAGCTTAAACTCTATGAACAGTTTTCTGGTTCTCGTGCCAAACAAGAAATCTCATCTATAGTAGCAGTGAATGAATCAGCTGCGACAGAAGGAAGCAGCAGATCACCGAAAACATCTTCACATGTTTTCCAGGCACTTCAATACTTGCTAAAGTTGTGCAGTCATCCTTTGCTTGTCGTTGGTGAGAAGATTCCTGATCAACTCTCTACCATTCTCTCAGAATTGTTGCCTGCTGGCTCTGAAATCATTTCAGAACTTCACAAACTACATCACTCCCCAAAATTGGTGGCTCTCCAGGAGATATTGGAAGAATGTGGAATAGGGGTTGATTCTTCAGGTTCTGAGAGTGCTCTTAGCATTGGGCAGCACAGGGTCTTGATATTTGCTCAACATAAGGCTTTTCTGGATATTATTGAGAAAGATTTATTCCAGACATATATGAAGAATGTCACATATTTGCGACTGGATGGATCTGTTGAGCCGGAGAAGCGTTTTGGAATTGTCAAAACATTCAATTCAGACCCCACCATTGATGTATTGTTGCTTACAACGCATGTGGGTGGGCTTGGTTTGAACCTGACATCCGCAGATACGCTTGTTTTTGTGGAGCATGATTGGAATCCCATGCGAGATCATCAGGCTATGGACAGAGCACACCGTTTAGGTCAGAAAAAAGTTGTCCATGTCCACCGTCTAATAATGCGTGGTACTTTGGAAGAGAAAGTCATGAGTCTACAAAGGTTCAAAGTTTCAGTGGCTAATGCTGTCATTAATGCTGAAAATGCCAGTATGAAAACAATGAATACAGATCAGTTGCTTGATTTGTTCACACCAGCAGAAAGCTCGAAGAAGGGAGCTTCTGCTGCGAACCGATCAAATGACACAGATGGAGATACTAAATCCGTGGGCAGTGGGAAGGGGTTGAAAGCAGTACTCGGAGGTTTGGAAGAGCTCTGGGACCATTCACAATATACAGAAGAGTACGATCTGACTCAATTTTTGTCAAAGCTTAATGGCTGA 6168 0.4133 MAQQSSRLQRLLTLLDTGSTQATRLTAARQIGDIAKSHPQDLISLLKKVSQYLHSKTWDTRVAAAHAIGAIAENVKHTSLNELIAAIATKMSEAGISGSVEDMCAWPYLQSKITGSAIRSFDLNKVLEFGALLASGGQEYDIGSDNVKNPKERLARQKQNLRRRLGLDVCEQFMDISDVIRDEDLIAYKSDLRPYGIDHRVFTSHSVHNIQKMVANMVPNVKSKWPSARERNLLKRKAKMNSKDQTKGWLEDGSTEASLAQNSTSKGTYPESVNYNKAFVYGNHDEDGFDHDEDGRWPFHIFVEQLIIDMFDPVWEVRHGSVMALREILTHQGASAGVLKPDSRLGGELFLEFEDKNVSNLLKRDREIDLNMQISGDELESNSKRPKLEDVSSTSMDGRNICSNEGDIEISIGTDTLGCNLPMDGRNGQFNDSSVCLDLESYSEGLCHSCKEPTNIAEHKDYSGEDKIASGNLNGLPQNCELVNLLNVIKSSWLQNYGFLQDCVIRFLCVLSLDRYDIFILFGDYVSDQVVAPVRETCAQALGAAFKYMHPALVNETLNILLKMQCRAEWEIRHGSLLGIKYLVAVRQEMLPELLGRVLPACKFGLEDPDDDVRAVAADSLIPAAAAIVGLQGQTLQSIMMLLWDILLDLDDLSPSTSSVMNLLAEIYSQDEMVPKMNRSYEFGDTEMSNLIGVGDSGGIDHDKNPYMLSMLAPRLWPFMRHSITSVRFSAIRTLERLLEAGYKRSMSELCSSSFWPSFILGDTLRTVFQNLLLESNEAILQCSERVWRLLVQCPVEDLQTAARSYMNSWIELASTPFGSALDTSKMFWPVTFPQKSQSRAAAKMRAVKVENEYGGDLGLDSTKGITLQERNGDVSMGSVKIVVGADIDTSVTNTRVITATALGIFASKLPEVSIKDVIDPLWNALTSLSGVQRQVASMVFISWFKEIKRSQLSENLKIIPGVPNYLKDWLLDLLACSDPAFPTKDSFLPYAELSRTYSKMRSEAGQLLNVMKCSGMFDDLLSTMKVELESLSVDDAINFASKVPALYNEIVGNESLGRNIMDDIESSKQRLLTTSGYLKCVQSNLHVTVSSAVAAAVVWMSEFPSRLTPIILPLMASIKREQEEILQMQSAEALAELMYHTVERRPCPNDKLIKNICVLTCMDPSETPQAEFIRSIDSIDDQGLMSFGTPGVKQRSKAHVLVGEDRSKVEGFISRRGSELSLRFLCEQFGVSLFDKLPKLWDCLTEVLKPSSVGSLAASEREFMLVIESVSNPQTLINNIQVVRTISPFLHEDLKPKLLTLLPCIFKCVKHPHVAVRLAASRCITSMARSMTLKVMGAVVENAVPMLADASSVHARQGAGMLISFLVQGLGAELVPYAPILVVPLLRCMSDCDQSVRQSVTHSFATLVPLLPLARGLPPPLGLGEGLYRNTEDIKFLEQLLDNSNIEDYQLCTELKVTLRRYQQEGINWLAFLKRFKLHGILCDDMGLGKTLQASAIVASEIAEHQSLNENEELLPSLIICPSTLVAHWAFEIEKYIDVSIISTLQYVGSAQERMYVRDNFCKNNVIITSYDVVRKDIDYLGQLQWNYCILDEGHIIKNAKSKVTLAVKQLKAQHRLILSGTPIQNNIMDLWSLFDFLMPGFLGTERQFHATYGKPLLAARDPKCSARDAEAGVLAMESLHKQVMPFLLRRTKEEVLSDLPEKIIQDRYCDLSPVQLKLYEQFSGSRAKQEISSIVAVNESAATEGSSRSPKTSSHVFQALQYLLKLCSHPLLVVGEKIPDQLSTILSELLPAGSEIISELHKLHHSPKLVALQEILEECGIGVDSSGSESALSIGQHRVLIFAQHKAFLDIIEKDLFQTYMKNVTYLRLDGSVEPEKRFGIVKTFNSDPTIDVLLLTTHVGGLGLNLTSADTLVFVEHDWNPMRDHQAMDRAHRLGQKKVVHVHRLIMRGTLEEKVMSLQRFKVSVANAVINAENASMKTMNTDQLLDLFTPAESSKKGASAANRSNDTDGDTKSVGSGKGLKAVLGGLEELWDHSQYTEEYDLTQFLSKLNG 2055
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele12g0377 2055 MobiDBLite consensus disorder prediction 238 267 - -
Lele12g0377 2055 Gene3D - 1091 1417 IPR011989 -
Lele12g0377 2055 Pfam Domain of unknown function (DUF3535) 787 1244 IPR022707 -
Lele12g0377 2055 MobiDBLite consensus disorder prediction 1999 2016 - -
Lele12g0377 2055 Gene3D - 1702 2018 IPR027417 -
Lele12g0377 2055 FunFam TATA-binding protein-associated factor BTAF1 1208 1418 - -
Lele12g0377 2055 MobiDBLite consensus disorder prediction 251 267 - -
Lele12g0377 2055 FunFam B-TFIID TATA-box-binding protein-associated factor 1 1430 1691 - -
Lele12g0377 2055 CDD DEXHc_Mot1 1460 1692 IPR044078 GO:0005524
Lele12g0377 2055 Pfam Helicase conserved C-terminal domain 1837 1938 IPR001650 -
Lele12g0377 2055 FunFam TATA-binding protein-associated factor BTAF1 1 96 - -
Lele12g0377 2055 SUPERFAMILY ARM repeat 6 1498 IPR016024 -
Lele12g0377 2055 FunFam TATA-binding protein-associated factor 172 1702 2020 - -
Lele12g0377 2055 MobiDBLite consensus disorder prediction 1999 2022 - -
Lele12g0377 2055 Gene3D - 520 807 IPR011989 -
Lele12g0377 2055 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1433 1692 IPR027417 -
Lele12g0377 2055 SMART ultradead3 1456 1653 IPR014001 -
Lele12g0377 2055 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1829 1984 IPR001650 -
Lele12g0377 2055 Pfam SNF2-related domain 1478 1774 IPR000330 GO:0005524|GO:0140658
Lele12g0377 2055 Gene3D - 1432 1691 IPR038718 -
Lele12g0377 2055 Gene3D - 4 94 IPR011989 -
Lele12g0377 2055 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 1472 1642 IPR014001 -
Lele12g0377 2055 CDD SF2_C_SNF 1807 1949 - -
Lele12g0377 2055 PANTHER TATA-BINDING PROTEIN-ASSOCIATED FACTOR 172 4 2054 IPR044972 GO:0003677|GO:0016887|GO:0017025
Lele12g0377 2055 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1693 1994 IPR027417 -
Lele12g0377 2055 SMART helicmild6 1852 1938 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele12g0377 Lele-ChrLele12 8420357 8447166 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele12g0377 1432 1992 RAD5 or RAD16-like Gene Family AT1G02670 27.005 4.96e-42 164
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Lele12g0377 DUF3535 4.3e-101 No_clan