Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele12g0376 ATGGCTTTTCTTCTTAACACCAGCTTCTGCCGCCACCTGTTATTAATTTTCTTGTGCTTTCTTTCTTCTTTTCTCATCATCAATTCACTTTCCAGTACTGTTTCCATTTCTGTAACTCCCAGCCACACATTAATCTGTGCCTTGCAGAGCACCGACCGGCTCCAAGGACAGAAAGCATTCCTCAACTGTACCAGTTTACCCACTGGAATTCAAATTCAAGTGAACCCCAACATTTCCTTCTCTGAGATTGCAGGAGGAAATGGGTTTGTCTGTGCACTGAGGCCACCGGTGCGTTCTCCTTCTCCTTCTTCTTCTTCTGTCATGTTTTGTTGGAGATACTCTACCAATGCGACAAATGTTGTCCCCAAGCGCATATACCGTGGGCCTATGATTCAAAATTTGGAAGCAGGAAGCTCCCAAGTTTGTGGCCTTTCAAGCCCCAACAATCGCCTTAACTGCTGGCAATGGCCTGAGTTCAACACTAGTATCGTGAACAGCTTCTCGAGCATATCTTTGGGAGAGAATTTCGTGTGTGGATTATTGGAAACATCTGGGAATATTAATTGCCTAGGAAATAATAGCATAGTTGGAGATGAACCCATGGGGAATTACTCTGTGATTGCTGCAGGAACCAGACATGCTTGTGCTATCTCCTCCATTAATGGAAGCTTGCATTGTTGGGGTGACGTACCAGGAGCCACAATGACGCCTCAAGGAAGATTCATCTCTTTGGCTTTGGGAGATAATCGAAGTTGTGCTTTGAGGGCTGTGAACCGAACAGTTGATTGCTGGGGCACGGACAATTTCAGCATGCCAGAGAGCATGAGAAACGCATCTTTTCAAGCAATTACAGCTAAAGGAAGTGTTTTCTGTGGTTTTATGTCTGATGATTATTCTTTGCATTGTTGGGGAAATGATAAGTTGGGGATGAACGGGACACCTCTTAAGGTGTTTGATAAGGTGCTACCTGGTCCTTGTAGAACTGAATGTCCATGTGGACCATTGCCAGGTTCTACAGAGTTTTGTGATCTGGGTCAATCTATTTGCAGTTCTTGTATTGAGAGCCAACAATCTGAATTCCAACCATCACCCTCGCCGCCACCGACGGGTGCTGCTTCACCATCAAGGCAACGTGATTGGAGCAGCAAAATGGTGGCATTTCTAGTGGTTGGTTGTGTTGGTTCACTTTCTTTGATGCTAGTCTTGGCATTCTTTCTCTACAGGTACTGCAAAGACCGAGGATGCCGGCGTGTCCACGACTCTGGCCGGTTGGATGAGCCAGAAGATCAACCGGCAGTCCAACCAACTTTAGAGAAGAGATTGAGCCATATGATTAGCATGGGAAATGGAGGCCACTTGGAGGAATTTTCTTTGCAAATACTATTGGAATTAACCAACAATTTCTCTGAAGATAAAAGAATAGGAACAGGGAGTTTTGGTTCAGTCTACCATGCCACACTGAAAGATGGTAGAGAAGTCGCCATTAAAAGAGCCGAGATATCAGCCACCTCCCCATCATACAAAATCCTAGGAGGCTCCAAGCGTCAAGAAGACAAAGACAACGCGTTTGTGAATGAACTCGAATCTTTATCGAGACTCAACCATAAGAACCTGGTGAGATTACTGGGTTTCTTTGAGGACAAGGATGAGAGAATTCTAGTCTACGAGTTTATGAACAATGGTAGTCTAACCGACCACCTGCACAAGTTCCATACTTCCACTTCAAATTCTCCTCTCATGTCATGGTTAGGACGCATCCAAGTAGCTTTAGATGCGGCCAGAGGCATAGAATACCTGCATGAGTATGCAATTCCACCGATCATTCATCGTGATATCAAATCAGCAAACATACTATTAGACGCAAAATGGACCGCCAAAGTATCAGATTTTGGACTCTCCCTAATGGGTCCTGAAGATGAAGAGTCTCATCTTTCTCTTCTAGCTGCAGGCACCGTGGGGTACATGGATCCAGAGTACTACAGGCTGCAACACCTGACCACAAAGAGCGATGTGTACAGTTTTGGTGTTGTTCTGCTTGAACTGCTTTGTGGGTATAAAGCGATACACCGGAACGAGAATGGGACGCCTAGGAATGTGGTGGATTTTCTGGTGCCATACATTGTGCAGGATGAAATTCATAGGGTTTTGGATAGGAGGTTGCCACCACCAACACCGTATGAGATAGAGGCAGTGGCATTTGTGGGATATTTGGCTACAGATTGTGTGAGTTTAGAAGGACGTGATAGGCCTACAATGACAAATGTTGTAAATAGGTTGGAAACAGCAATGGATGCTTGTTTAGCACAACCAAAACCAACCCTCTCTCGCTTTGACTCTGCTTCTGATTCAGATTAG 2355 0.4501 MAFLLNTSFCRHLLLIFLCFLSSFLIINSLSSTVSISVTPSHTLICALQSTDRLQGQKAFLNCTSLPTGIQIQVNPNISFSEIAGGNGFVCALRPPVRSPSPSSSSVMFCWRYSTNATNVVPKRIYRGPMIQNLEAGSSQVCGLSSPNNRLNCWQWPEFNTSIVNSFSSISLGENFVCGLLETSGNINCLGNNSIVGDEPMGNYSVIAAGTRHACAISSINGSLHCWGDVPGATMTPQGRFISLALGDNRSCALRAVNRTVDCWGTDNFSMPESMRNASFQAITAKGSVFCGFMSDDYSLHCWGNDKLGMNGTPLKVFDKVLPGPCRTECPCGPLPGSTEFCDLGQSICSSCIESQQSEFQPSPSPPPTGAASPSRQRDWSSKMVAFLVVGCVGSLSLMLVLAFFLYRYCKDRGCRRVHDSGRLDEPEDQPAVQPTLEKRLSHMISMGNGGHLEEFSLQILLELTNNFSEDKRIGTGSFGSVYHATLKDGREVAIKRAEISATSPSYKILGGSKRQEDKDNAFVNELESLSRLNHKNLVRLLGFFEDKDERILVYEFMNNGSLTDHLHKFHTSTSNSPLMSWLGRIQVALDAARGIEYLHEYAIPPIIHRDIKSANILLDAKWTAKVSDFGLSLMGPEDEESHLSLLAAGTVGYMDPEYYRLQHLTTKSDVYSFGVVLLELLCGYKAIHRNENGTPRNVVDFLVPYIVQDEIHRVLDRRLPPPTPYEIEAVAFVGYLATDCVSLEGRDRPTMTNVVNRLETAMDACLAQPKPTLSRFDSASDSD 784
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele12g0376 784 SMART serkin_6 468 767 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele12g0376 784 Pfam Protein kinase domain 469 757 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele12g0376 784 Gene3D Transferase(Phosphotransferase) domain 1 558 772 - -
Lele12g0376 784 PANTHER SERINE/THREONINE-PROTEIN KINASE-LIKE PROTEIN CCR4 199 769 IPR044815 GO:0004674
Lele12g0376 784 FunFam PTI1-like tyrosine-protein kinase 3 558 769 - -
Lele12g0376 784 CDD STKc_IRAK 474 760 - -
Lele12g0376 784 SUPERFAMILY Protein kinase-like (PK-like) 445 760 IPR011009 -
Lele12g0376 784 Gene3D - 200 327 IPR009091 -
Lele12g0376 784 Gene3D - 27 199 IPR009091 -
Lele12g0376 784 SUPERFAMILY RCC1/BLIP-II 108 315 IPR009091 -
Lele12g0376 784 ProSiteProfiles Protein kinase domain profile. 468 763 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele12g0376 784 ProSitePatterns Serine/Threonine protein kinases active-site signature. 607 619 IPR008271 GO:0004672|GO:0006468
Lele12g0376 784 Gene3D Phosphorylase Kinase; domain 1 441 557 - -
Lele12g0376 784 ProSitePatterns Protein kinases ATP-binding region signature. 474 496 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele12g0376 Lele-ChrLele12 8407117 8409471 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele12g0376 32 776 Receptor kinase-like Gene Family AT5G47850 50.792 0.0 708
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CR4L Lele12g0376 Pkinase 8.8e-45 CL0016