Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele12g0322 ATGTTTAAAGAAATTCATAAATTGGAGCTTGGGGATGACCAAAGTCCGAGTTGTATCTGGTCCTCCCCTGAAGTTGCACGTTTAGATCAAAACTATACAGTTCCTGATGAAGGAGGATTATTCCAGATCAGTTTCAGCATGAGGGTTGTTATCTCCACAAGAACAAACCAGTTTTCCATAGAAGTAGAAAGCCAAGAAAAAGTTGTTGAAATCAAAAGGAAGATAGAACAAACCCTCAGCATCCCAGTGGCTTCACAGATACTTACAGTTTCTGGGTGGGAGCTTGTAGATGGGTTAGACATGGAAGATCCCATAGTCACATATGGTACTAAAGTTCACCTCACAACCGAACCAGTTTCTTCCGCACTCTCTTCCCATTTTAATAAAATCCAAATCATAGTGAAGTTTTCAGCAAGACAGATCATGATAGAGGTGGATAAAACAGACACAATTCTTAGTTTGAAGGAAAAGATTCACAGTCTTGATAACACACCAATAAAAAGAATGCAACTTTTGTTCTCAGGTGTGGAATTAGATGAAGATTTCAGAAGCTTGACTGAGTATGGCATAAGTGGGTTTTCTGAGATTATCGTGTTCCTCAAGACGATGAGTCGCTCAAGAGATGATCCTCCTTCAAGGAAGTTGAGCTTAGTGGTTCAAACTTCGTCTAGTTTACTGAACACAACAACGATTCCAGTGGAAATGAGAGATGCAAGTACTGTGAATGAGTTGAAGCAATTGTTATTGAGCAGAAAAATTCTGCCACTTGATGAATATTTGTTCATACACAAGCAAAGGATAACGCGTGATGGCTGTAGCCTTAGGTGGCATGGAGTTGAAAATGGGGACTTTCTTTATGCCTTTAAAGGGACTGTTAGTAGCAATGGTACTTTTTGA 897 0.3958 MFKEIHKLELGDDQSPSCIWSSPEVARLDQNYTVPDEGGLFQISFSMRVVISTRTNQFSIEVESQEKVVEIKRKIEQTLSIPVASQILTVSGWELVDGLDMEDPIVTYGTKVHLTTEPVSSALSSHFNKIQIIVKFSARQIMIEVDKTDTILSLKEKIHSLDNTPIKRMQLLFSGVELDEDFRSLTEYGISGFSEIIVFLKTMSRSRDDPPSRKLSLVVQTSSSLLNTTTIPVEMRDASTVNELKQLLLSRKILPLDEYLFIHKQRITRDGCSLRWHGVENGDFLYAFKGTVSSNGTF 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele12g0322 298 SUPERFAMILY Ubiquitin-like 123 203 IPR029071 -
Lele12g0322 298 ProSiteProfiles Ubiquitin domain profile. 130 205 IPR000626 GO:0005515
Lele12g0322 298 SUPERFAMILY Ubiquitin-like 46 120 IPR029071 -
Lele12g0322 298 Gene3D - 44 118 - -
Lele12g0322 298 CDD Ubl_ubiquitin_like 132 199 - -
Lele12g0322 298 Pfam Ubiquitin family 132 201 IPR000626 GO:0005515
Lele12g0322 298 Pfam Ubiquitin family 52 116 IPR000626 GO:0005515
Lele12g0322 298 ProSiteProfiles Ubiquitin domain profile. 215 286 IPR000626 GO:0005515
Lele12g0322 298 Gene3D - 203 293 - -
Lele12g0322 298 ProSiteProfiles Ubiquitin domain profile. 43 121 IPR000626 GO:0005515
Lele12g0322 298 CDD Ubl_ubiquitin_like 49 114 - -
Lele12g0322 298 SUPERFAMILY Ubiquitin-like 225 288 IPR029071 -
Lele12g0322 298 Gene3D - 129 201 - -
Lele12g0322 298 PANTHER UV EXCISION REPAIR PROTEIN RAD23 47 118 - -
Lele12g0322 298 SMART ubq_7 47 117 IPR000626 GO:0005515
Lele12g0322 298 SMART ubq_7 130 201 IPR000626 GO:0005515
Lele12g0322 298 SMART ubq_7 215 290 IPR000626 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele12g0322 Lele-ChrLele12 3013323 3014485 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele12g0322 130 201 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 35.616 4.29e-06 43.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele12g0322 12 3013323 3014485 Lele12g0322 12 3013323 3014485 ECH
Lele09g0997 09 18952674 18953435 Lele12g0322 12 3013323 3014485 hybridization
Lele10g0953 10 20742545 20742973 Lele12g0322 12 3013323 3014485 hybridization