Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele12g0315 ATGGCTGTGGCTTCAACATTATTCCTTCTGGTTTTCTGGTTATGGATTCCCACAGAAGCTGTGGGAAGAGCAGGAAATAGTACCATGAAAAACACTACCGTCTCTTCGAGACCGAATGTTGTTAGAATTGGAGCCCTGTTTACGTTTGATTCAGTCATTGGAAGATCTGCTAAACCTGCAATTTTGGCTGCCGCTGATGATGTTAATTCTGATGCAAGCATTCTTGGCGGGATAAAGCTCGAAGTTATTTTACATGATACCAACTGCAGTGGATTTCTTGGAACCCTAGAAGCTTTGCGGTTCATGGAGAATGATGTGGTTGCTGTTATCGGTCCACAATCTTCTGGGATAGCTCATGTGATCTCTCATGTTGTTAATGAACTTCATGTACCTCTTCTGTCATTCGGGGCTACCGATCCTACTCTGTCTTCTCTGCAGTACCCTTATTTCATCCGAACTACGCAAAATGATCATTTCCAGATGTATGCAGTTGCAGACTTGATTGAATATTATGGATGGAGAGAAGTAATCGCCATTTTCGTGGATGATGATAATGGAAGAAATGGAGTTTCTGTATTAGGCGACGCGCTCGCGCAGAAACGTGCCAGGATCTCATACAAGGCAGCTTTCCCTCCAGATGCTTCTAGAACTGCCATAAATGAGCTGTTAAATGAAGTGAATTTAATGGAATCACGGGTCTATGTTCTTCATGTGAATCCTGATTCAGGTTTGGACATTTTCTCTCTTGCGAAAAAGGTTGGCATGATGACCAATGGCTATGTTTGGATTGCAACTGATTGGCTTCCTTCAGTTCTTGATTCGCAATCACCAGCTAGCCTTGAAACCTTGAATCTTTTACAAGGTGTTGTCGCATTTCGTCATCACGGTCCTTATACCGATACGAAGAACAATCTTCTCTCAAAGTTGAAAAAACTGAACAACAGTAAGATTGCAAGCTTCAATTCTTATGCTTTGTATGCATATGATTCTGTCATGCTAGCTGCCCATGCTTTGCATGATTTTCTCAATCATGGTGGAACCATATCTTTCTCCAATGACCCTAACTTACATGACACTAATGGAAGTTTGTTGCATTTATCATCGCTTCGAACTTTCAACGGTGGCCCCAAGTTTCTGCAGACAATCCTGAGAATGAATTTCACCGGTGTTAGCGGCCAAATTCAGTTTGATAAGGACAAGAACTTACTTCGCCCAGCATATGATATCGTAAACATCGGTGCATCGGGTCCGCGGATTATCGGTTATTGGTCTAATCACTCTGGGCTTACAGAGATAGCTCCTGAAAATTTGTACTCAAAATCATCTAACAAGTCAACTGGCAAGAATAGACATCTTTACAATGTGATATGGCCAGGATTGACATCAATTACACCCAGAGGATGGGTTTTCCCTAATAATGGAAAACCACTGAGAATTGCAGTGCCGAATCGAGTAAGCTTCACCGAGTTTGTTAGCAAAGAGAAGGACCCTCCAGGCGTAAAAGGTTTTAGCATCGATGTCTTCGAAGCAGCATTGAATTTATTGCCTTATCCTGTCCCTAAGCAATATGTACTATTTGGACATGGTGATAGAAATCCTAACTATGATGATCTTGTGAATCAGGTTGCACAAAATAAATATGATGCTGCTGTTGGGGATGTTACCATTGTCACAAACAGGACAAGAATTGTGGATTTTACTCAACCTTACATGACTTCAGGGTTGGTTGTTGTTGTTCCTGTTAGAGAGGTCAAGTCAAGCCCTTGGTCTTTCCTTAAGCCATTTACTGCACAAATGTGGTTTGTCACTGGTGCCTTCTTCCTTTTCGTCGGAGCTGTCGTATGGATTCTCGAACACCGGCACAATCACGAGTTCCGAGGACGACCCAGGAAACAACTCATGACAATCTTCTGGTTTAGCTTCTCAACAATGTTTTTCTCACACAGAGAAAATACTGTGAGTGCTCTGGGGAGATTGGTGCTGATCATATGGCTTTTTGTGGTGCTAATTATCAATTCGAGCTACACAGCTAGCTTGACATCAATCCTCACAGTGCAGCAACTTTCATCACAAATTGAAGGCATTGACAGTTTGATCTCTAGCACTCAGCCGATCGGAGTTCAAGACGGCTCATTCGCCCTAAAGTATCTCATCGACGAGCTTAACATAGCCCAAGCAAGAATCGTTATATTGAAAAATCTGCAGGACTATGTTGATGCCCTTACACGTGGACCTAGAAAAGGAGGGGTGGTAGCCGTTGTGGATGAGCTTCCTTATATTGAAATCCTCATGTCCAACACCGATTGTCAGTTCAGAACTGTAGGCCAAGAATTCACAAAAAGTGGATGGGGATTTGCATTTCAGAGGGACTCACCACTTGCTGTGGACATGTCTACAGCGATTCTGCAACTATCAGAGAACGGGGACTTGCAGAAGATTCACGACAAGTGGTTGTTAAAGAACGAATGTTCTGCGACACAAAACGATGATGAAGATTCAAACCAACTATCACTGAGTAGTTTCTGGGGATTGTTCCTCATAAGTGGGATTGCTTGTCTTCTTGCTCTGATTGCGTACTGTATAAGAGTGTTTTGTCAGTTCACAAAATTCTCACCAGCCATTGGTGAAGAGGTCGTCGACCATGAAATTCAACAACGCATGCCTAATTCTAAACGACCACGTCGAACTCCAAGTTTCAAGGACTTGCTGGAATTTGCTGATACGAAAGAAGCTGAAATCAAAGAGCAAATCAGAAAGAAGAGCAATAAACGTGGACGACCACGAAGCTTTGATTTCTAA 2799 0.4259 MAVASTLFLLVFWLWIPTEAVGRAGNSTMKNTTVSSRPNVVRIGALFTFDSVIGRSAKPAILAAADDVNSDASILGGIKLEVILHDTNCSGFLGTLEALRFMENDVVAVIGPQSSGIAHVISHVVNELHVPLLSFGATDPTLSSLQYPYFIRTTQNDHFQMYAVADLIEYYGWREVIAIFVDDDNGRNGVSVLGDALAQKRARISYKAAFPPDASRTAINELLNEVNLMESRVYVLHVNPDSGLDIFSLAKKVGMMTNGYVWIATDWLPSVLDSQSPASLETLNLLQGVVAFRHHGPYTDTKNNLLSKLKKLNNSKIASFNSYALYAYDSVMLAAHALHDFLNHGGTISFSNDPNLHDTNGSLLHLSSLRTFNGGPKFLQTILRMNFTGVSGQIQFDKDKNLLRPAYDIVNIGASGPRIIGYWSNHSGLTEIAPENLYSKSSNKSTGKNRHLYNVIWPGLTSITPRGWVFPNNGKPLRIAVPNRVSFTEFVSKEKDPPGVKGFSIDVFEAALNLLPYPVPKQYVLFGHGDRNPNYDDLVNQVAQNKYDAAVGDVTIVTNRTRIVDFTQPYMTSGLVVVVPVREVKSSPWSFLKPFTAQMWFVTGAFFLFVGAVVWILEHRHNHEFRGRPRKQLMTIFWFSFSTMFFSHRENTVSALGRLVLIIWLFVVLIINSSYTASLTSILTVQQLSSQIEGIDSLISSTQPIGVQDGSFALKYLIDELNIAQARIVILKNLQDYVDALTRGPRKGGVVAVVDELPYIEILMSNTDCQFRTVGQEFTKSGWGFAFQRDSPLAVDMSTAILQLSENGDLQKIHDKWLLKNECSATQNDDEDSNQLSLSSFWGLFLISGIACLLALIAYCIRVFCQFTKFSPAIGEEVVDHEIQQRMPNSKRPRRTPSFKDLLEFADTKEAEIKEQIRKKSNKRGRPRSFDF 932
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele12g0315 932 CDD GluR_Plant 475 818 - -
Lele12g0315 932 SUPERFAMILY Periplasmic binding protein-like I 36 468 IPR028082 -
Lele12g0315 932 SUPERFAMILY Periplasmic binding protein-like II 454 821 - -
Lele12g0315 932 CDD PBP1_GABAb_receptor_plant 42 431 IPR044440 -
Lele12g0315 932 Pfam Receptor family ligand binding region 58 412 IPR001828 -
Lele12g0315 932 Pfam Ligand-gated ion channel 820 852 IPR001320 GO:0015276|GO:0016020
Lele12g0315 932 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 54 70 - -
Lele12g0315 932 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 245 268 - -
Lele12g0315 932 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 114 142 - -
Lele12g0315 932 FunFam Glutamate receptor 156 324 - -
Lele12g0315 932 SMART GluR_14 478 820 IPR001320 GO:0015276|GO:0016020
Lele12g0315 932 FunFam Glutamate receptor 714 822 - -
Lele12g0315 932 Gene3D - 472 587 - -
Lele12g0315 932 Gene3D - 588 712 - -
Lele12g0315 932 FunFam Glutamate receptor 472 588 - -
Lele12g0315 932 PIRSF IGluLR_plant 1 930 IPR017103 -
Lele12g0315 932 Gene3D - 60 404 - -
Lele12g0315 932 Pfam Bacterial extracellular solute-binding proteins, family 3 499 819 IPR001638 -
Lele12g0315 932 Gene3D - 713 822 - -
Lele12g0315 932 FunFam Glutamate receptor 588 718 - -
Lele12g0315 932 Gene3D - 156 429 - -
Lele12g0315 932 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 42 889 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele12g0315 Lele-ChrLele12 2948061 2952243 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele12g0315 37 785 Ion Channels AT1G05200 67.156 0.0 1078