Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele12g0309 ATGTATGCGCAATCTTCTTCCTCAGCTTCTTCACTCCTCAGAGCTTCCAGAAATAGGCTTTTGCATCCCTCTTTGTCTAGAACCCTCGCACATCCACCTGCGAGACCGCCTCCTAGCCACCGATCTCTCAGCTTCTTTTCCACGCCCCGATCATTCCGCACCTTCGCTCCCCGCTGGAGCCACGGCGTCGACTGGAGGTCTCCGGTCAGTCTCAGGGCTCAGATCAGAGCCGTCGCTCCTATGATTGAACAGTTCCAACGCAAGATCGCTTCTATGGCCGGTGAAAATCCTTTCAAGGCGAACTTGACGAGTCTCCCTAAGCCTGGGGGTGGCGAGTTCGGAAAGTTCTACAGCCTTGCTTCTCTGAACGATCCAAGAATTGATAGGTTGCCTTATTCCATCAGAATTCTCCTGGAATCTGCCATTCGTAATTGTGACAATTTCCAAGTTATGAAAGAAGATATTGAGAAGATCGTTGATTGGGAAAATAGTTCTGTCAAGCAAGTTGAAATTCCTTTCAAGCCTGCGCGTGTTCTCCTGCAGGATTTTACAGGAGTCCCGGCTGTTGTTGACCTAGCTTGTATGCGTGATGCTATGAATAGGCTTGGCAGCGATTCTAACAAGATAAATCCTCTGGTACCTGTTGATCTTGTTATCGATCACTCAGTTCAAGTTGATGTAACAAGGTCAGAGAATGCAGTGCAGGCCAATATGGAGCTTGAGTTCCAAAGAAACAAGGAAAGATTTGCATTTCTTAAATGGGGTTCAAATGCTTTCCGCAACATGCTTGTTGTTCCTCCTGGTTCTGGTATTGTACATCAGGTGAATCTTGAGTACCTTGGACGTGTTGTTTTCAACACTGATGGTTTGCTCTATCCTGACAGTGTGGTTGGTACTGATTCCCACACTACTATGATAGATGGGCTTGGGGTGGCTGGTTGGGGTGTTGGAGGCATTGAAGCAGAGGCAGCAATGCTTGGTCAGCCTATGAGTATGGTTTTGCCTGGTGTCGTTGGATTCAAGTTATCTGGGAAACTGCGCAATGGTGTTACAGCAACTGATTTGGTTTTAACTGTTACCCAAATGCTGAGGAAGCATGGCGTTGTTGGGAAATTTGTTGAATTTTATGGGGATGGCATGGGTGAGCTATCATTAGCTGATAGGGCCACCATCGCTAACATGTCTCCTGAGTATGGTGCCACCATGGGCTTCTTCCCTGTAGATCATGTTACTTTACAATACCTCAAGTTAACTGGAAGAAGTGATGAGACAGTTGCCATGATAGAGGCATATCTCAGGGCAAACAAAATGTATGTTGACTATAATGAGCCTCAACAAGAAAGAGCTTATTCATCCTATCTTGAACTAAACCTTTCTGATGTTGAGCCCTGTATCTCGGGACCAAAGAGACCTCATGATCGGGTGCTTTTAAAAGAAATGAAGGCTGATTGGCATGCTTGTCTTGATAACAAAGTTGGGTTTAAGGGATTTGCTATACCAAAAGAGGCCCAGGGTAAAGTTGCAAAATTTCAATTCCACGGGCAGCCAGCAGAGCTCAAGCATGGAAGTGTTGTCATTGCTGCAATCACAAGCTGCACTAACACATCAAACCCAAGCGTTATGCTTGGGGCTGGTCTTGTTGCGAAAAAGGCTCATGAGCTTGGTTTGCAGGTCAAACCTTGGGTAAAAACAAGTCTTGCTCCAGGCTCTGGAGTGGTTACAAAGTATCTGCTTCAAAGTGGACTGCAGAAATTTCTAAATGAGCAGGGTTTCAACATTGTTGGATTTGGCTGCACAACATGTATTGGAAATTCAGGGGATTTGGATGAATCAGTTTCTGCTGCCATTTCTGAAAATGACATTGTTGCAGCTGCTGTGCTATCTGGAAACCGTAATTTTGAGGGTCGTGTGCATCCCTTAACCAGAGCTAACTATCTTGCCTCACCTCCTTTGGTTGTTGCTTATGCTCTTGCTGGCACGGTTGATATTGACTTTGAAAAGGAGCCAATTGGGACAGGGAAGGATGGTAAGAGTATCTTTTTGAGGGATGTTTGGCCATCCACTGAAGAAATTGCTGAGGCTGTCCAATCTAGTGTGTTGCCTGACATGTTCCGAAGTACCTATGAGTCTATTACCAAGGGCAACCCTATGTGGAATCAACTACAAGTTCCTTTGGAGACCCTTTACTCATGGGATCCCAACTCAACATATATCCATGAACCTCCATACTTTAAGGGCATGACCATGGATCCTCCTGGTGCTCATGGTGTGAAGGATGCATATTGCCTGCTGAATTTTGGTGACAGTATCACTACTGATCACATTTCTCCAGCAGGAAGCATTCATAAGGACAGTCCTGCTGCAAAATACTTGCTTGAGCGTGGAGTGGATCGCAAGGACTTCAATTCTTATGGAAGTCGTCGTGGCAATGATGAAATAATGGCAAGGGGAACTTTTGCTAACATCCGTCTTGTTAACAAGCTCTTGAATGGGGAAGTTGGCCCCAAAACCGTTCACATTCCATCAGGGGAGAAACTCTCTGTATTTGATGCAGCAATGAAATACAAATCTGCCGGGCAGGACACCATTGTGCTGGCTGGTGCTGAATATGGTAGTGGAAGTTCAAGAGATTGGGCTGCCAAGGGTCCGATGCTATTGGGGGTCAAAGCAGTGATTGCTAAGAGTTTCGAGAGAATTCACCGTAGTAATTTGGTAGGCATGGGCATTATTCCTCTTTGCTTTAAATCTGGTGAGGATGCTGACACACTTGGATTGACTGGTCATGAACGATACTCAATTGATCTCCCAAGTAAAATTAGTGACATAAGGCCCGGCCAAGATGTCACTGTCACCACTGATTCTGGAAAATCTTTCACCTGCACAGTACGCTTTGACACTGAGGTGGAACTTGCTTACTTCAATCACGGAGGCATCCTTCCATATGTCATAAGGAACCTCATTCAGCAGTGA 2970 0.4566 MYAQSSSSASSLLRASRNRLLHPSLSRTLAHPPARPPPSHRSLSFFSTPRSFRTFAPRWSHGVDWRSPVSLRAQIRAVAPMIEQFQRKIASMAGENPFKANLTSLPKPGGGEFGKFYSLASLNDPRIDRLPYSIRILLESAIRNCDNFQVMKEDIEKIVDWENSSVKQVEIPFKPARVLLQDFTGVPAVVDLACMRDAMNRLGSDSNKINPLVPVDLVIDHSVQVDVTRSENAVQANMELEFQRNKERFAFLKWGSNAFRNMLVVPPGSGIVHQVNLEYLGRVVFNTDGLLYPDSVVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKLRNGVTATDLVLTVTQMLRKHGVVGKFVEFYGDGMGELSLADRATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDETVAMIEAYLRANKMYVDYNEPQQERAYSSYLELNLSDVEPCISGPKRPHDRVLLKEMKADWHACLDNKVGFKGFAIPKEAQGKVAKFQFHGQPAELKHGSVVIAAITSCTNTSNPSVMLGAGLVAKKAHELGLQVKPWVKTSLAPGSGVVTKYLLQSGLQKFLNEQGFNIVGFGCTTCIGNSGDLDESVSAAISENDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVAYALAGTVDIDFEKEPIGTGKDGKSIFLRDVWPSTEEIAEAVQSSVLPDMFRSTYESITKGNPMWNQLQVPLETLYSWDPNSTYIHEPPYFKGMTMDPPGAHGVKDAYCLLNFGDSITTDHISPAGSIHKDSPAAKYLLERGVDRKDFNSYGSRRGNDEIMARGTFANIRLVNKLLNGEVGPKTVHIPSGEKLSVFDAAMKYKSAGQDTIVLAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKSGEDADTLGLTGHERYSIDLPSKISDIRPGQDVTVTTDSGKSFTCTVRFDTEVELAYFNHGGILPYVIRNLIQQ 989
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele12g0309 989 PANTHER ACONITASE/IRON-RESPONSIVE ELEMENT FAMILY MEMBER 90 986 IPR006249 -
Lele12g0309 989 CDD AcnA_IRP_Swivel 765 935 IPR044137 -
Lele12g0309 989 CDD AcnA_IRP 177 661 - -
Lele12g0309 989 Gene3D Aconitase, domain 3 464 687 IPR015931 -
Lele12g0309 989 Pfam Aconitase family (aconitate hydratase) 156 659 IPR001030 -
Lele12g0309 989 Gene3D Aconitase, domain 3 95 463 IPR015931 -
Lele12g0309 989 SUPERFAMILY LeuD/IlvD-like 728 986 - -
Lele12g0309 989 FunFam Aconitate hydratase 96 463 - -
Lele12g0309 989 Pfam Aconitase C-terminal domain 788 915 IPR000573 -
Lele12g0309 989 ProSitePatterns Aconitase family signature 1. 524 540 IPR018136 -
Lele12g0309 989 SUPERFAMILY Aconitase iron-sulfur domain 110 724 IPR036008 -
Lele12g0309 989 TIGRFAM aconitase_1: aconitate hydratase 1 114 987 IPR006249 -
Lele12g0309 989 Gene3D - 688 749 - -
Lele12g0309 989 PRINTS Aconitase family signature 528 539 IPR001030 -
Lele12g0309 989 PRINTS Aconitase family signature 463 477 IPR001030 -
Lele12g0309 989 PRINTS Aconitase family signature 367 380 IPR001030 -
Lele12g0309 989 PRINTS Aconitase family signature 305 320 IPR001030 -
Lele12g0309 989 PRINTS Aconitase family signature 381 394 IPR001030 -
Lele12g0309 989 PRINTS Aconitase family signature 238 251 IPR001030 -
Lele12g0309 989 PRINTS Aconitase family signature 262 270 IPR001030 -
Lele12g0309 989 PRINTS Aconitase family signature 590 603 IPR001030 -
Lele12g0309 989 PRINTS Aconitase family signature 291 304 IPR001030 -
Lele12g0309 989 ProSitePatterns Aconitase family signature 2. 590 603 IPR018136 -
Lele12g0309 989 FunFam cytoplasmic aconitate hydratase 464 687 - -
Lele12g0309 989 FunFam Aconitate hydratase 751 988 - -
Lele12g0309 989 Gene3D Aconitase, domain 4 752 988 IPR015928 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele12g0309 Lele-ChrLele12 2892494 2900094 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele12g0309 12 2892494 2900094 Lele29g0440 29 2682693 2684296 CCT
Lele12g0309 12 2892494 2900094 Lele31g1104 31 17784212 17785554 CCT
Lele12g0309 12 2892494 2900094 Lele32g0421 32 2651278 2652842 CCT
Lele31g1106 31 17791627 17792820 Lele12g0309 12 2892494 2900094 CCT
Lele32g0419 32 2642419 2643603 Lele12g0309 12 2892494 2900094 CCT
Lele12g0309 12 2892494 2900094 Lele12g0309 12 2892494 2900094 ECH
Lele09g1009 09 19132519 19148816 Lele12g0309 12 2892494 2900094 hybridization
Lele10g0967 10 20882437 20890050 Lele12g0309 12 2892494 2900094 hybridization