Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele12g0304 ATGAAGAAGGGACCCTGGACAACGACAGAAGATGAGATGTTGAGAGAATACTTGAAGAAGCATGGCGAAGGAAACTGGACCAGCGTGCACAAGAACACTGGGCTGTCTCGCAGCGGCAAAAGTTGCAGACTCCGATGGGCAAATCACCTTCGACCTAATCTCAAGAAAGGCTCTTTTTCTGAAGACGAGCAAGATAAGATCATCTACCTGCACTCCAAGTTCGGTAACAAATGGTCTCGCATTGCCGCTGCGTTACCTGGAAGAACGGACAACGAGGTAAAGAATTTCTGGAATAGTAGGACGAAAAGATGCTTCAACACTGGGACGCCTCTTTATCCTCGTTCACTTCAGCCCATCAACAACGTTCCTCCTCCTCCTCCTCCTCCTTCCTCTCTCCAAAATTCCACCAATTTTCCTCATCTCAGCACTGCTCAGCTTGCTGCAAATTTGCAGGATCTTCTATCAACCCTTGGTTCTCGATATGGCCCCTCCCTCTCATGTTCCCCTCTTTCCACTCTTATCAATACTTCCCCACCTGCACCACCGTCCCCTGCTTCAGCTTTCGCTATTCATGACTGCTATCAACCAGAGAACAGCCTGCTCGAGGATCTTCTTGGCGAGGCTCCTGCACTTGCTCATGACGAGGATTCAACCATACCAATAATTGACTTATCTGATAACCAGACGGATGATTCTCTCTCTTTACCATTATCCACAGGCACGCTGGGTGAACGGTGCAATTGGGCAAGGCCAATCAAGGTTTGGCTGGCCCTGATAATGCTCAGTAATTTTATTGGGATCTTGGTAATTGCTGCAACAACATACCTGGAGTGTGCTGAATTTGATTCTCCAGATGATGGAGTTGGCTTGAATGCCTCTTTGGATGCTTATGTACGTACAAATCCTCCTTGTGAGGAGTACATTTAA 927 0.4757 MKKGPWTTTEDEMLREYLKKHGEGNWTSVHKNTGLSRSGKSCRLRWANHLRPNLKKGSFSEDEQDKIIYLHSKFGNKWSRIAAALPGRTDNEVKNFWNSRTKRCFNTGTPLYPRSLQPINNVPPPPPPPSSLQNSTNFPHLSTAQLAANLQDLLSTLGSRYGPSLSCSPLSTLINTSPPAPPSPASAFAIHDCYQPENSLLEDLLGEAPALAHDEDSTIPIIDLSDNQTDDSLSLPLSTGTLGERCNWARPIKVWLALIMLSNFIGILVIAATTYLECAEFDSPDDGVGLNASLDAYVRTNPPCEEYI 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele12g0304 308 FunFam MYB-related transcription factor 2 55 - -
Lele12g0304 308 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 54 IPR017930 -
Lele12g0304 308 Gene3D - 2 55 - -
Lele12g0304 308 Gene3D - 58 103 - -
Lele12g0304 308 SMART sant 55 103 IPR001005 -
Lele12g0304 308 SMART sant 2 52 IPR001005 -
Lele12g0304 308 ProSiteProfiles Myb-like domain profile. 1 50 IPR001005 -
Lele12g0304 308 ProSiteProfiles Myb-like domain profile. 51 101 IPR001005 -
Lele12g0304 308 Pfam Myb-like DNA-binding domain 3 50 IPR001005 -
Lele12g0304 308 Pfam Myb-like DNA-binding domain 56 99 IPR001005 -
Lele12g0304 308 SUPERFAMILY Homeodomain-like 2 97 IPR009057 -
Lele12g0304 308 CDD SANT 58 98 IPR001005 -
Lele12g0304 308 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 55 105 IPR017930 -
Lele12g0304 308 CDD SANT 5 50 IPR001005 -
Lele12g0304 308 PANTHER TRANSCRIPTION FACTOR MYB33-RELATED 1 120 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele12g0304 Lele-ChrLele12 2815438 2816800 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele12g0304 1 117 MYB Transcription Factor Family AT2G32460 69.231 1.11e-55 186
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lele12g0304 Myb_DNA-binding 8.5e-14 CL0123