Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele12g0302 ATGAATTGGAGTAGAGGTAACGTCCTCGGCCATGGCTCGTCGGCCACCGTCTCCTTGGCTGCGTCTCAACAGTGTGGCGAAGCGTTCCTTGCCGTCAAGTCATCGGAGCTTTCTTGCTCGGGGTTGTTACAGAGAGAGCAAAGAATTCTCTCTTCTTTGTCTTCTCCTTATATAGTTAGCTATAAAGGGTGTGACATCACGAGGGAGAACAACAAGGTGTTCTACAATCTTTTCATGGAGTATATGCCTCTTGGAACCCTCACTCAAGCGACTCGCCGGCGGGGTGGCCGATTCGACGAGCCGACGATCGCGTACTACGTTCGGCAAGTTTTGCAGGGGCTGGAGTATCTACATTCAAACGGGTTGGTACATTGTGACATTAAGGGTAGCAATATCTTAATTGGAGAAGATGGAGCAAAAATTGCAGACTTTGGGTGCGCTAAGCAGGCGGCTGCGGTGGCGGCGCCGATAAGTGGGACGCCTATATTTATGTCGCCGGAGGTGGCTCGTGGGGAAGAACAGGGGTATGCTTGTGACATATGGGCACTTGGGTGCACTGTGATTGAAGTGGCTTCAGGGGTTTCACCATGGCTTAATGCAGGAGACCCTATTTCGATTCTTTACAAGATAGCATATTCCGGCGAGGTGCCGGAGATTCCGGGTTTTCTATCAGAGGAAGCAAAGGATTTCTTGGGGAAGTGCTTAAGGAGGAATCCAAAAGAGAGATGGACGGCAGGTCAACTACTGAAGCATCCATTTGTTGGGGAATTGAACTCCAATTCGAAGCAGCAGCAAATCCACGAATCTAATTCAAGCTCTCCAACAAGTATTTTGGAGCAAAGCTTTTGGAGTTCAGAGGAAGAATCATCATCAGAGAGCTTAAGCAATCTACTCCATAAACATACAAGTTTCGAAAATTCGCCAGCTGTTAGAATCAAAAGGTTAGCGGTAAGTTCAGGGGATCCCAAGTGGATAGAAGACGAGAATTGGATCACAACGATAGGGAAAGAAGAAGGATCCGAAGCATCACCCAGCAATAATTCGAAAGAGTCAGAGAAAATCAATGTGATTAGTAGTAGAATTAGTGATTATTTTTGGGATAATTACGAATTTAGGGATGTTAGAATTAAAACAAGCAGTTTCATTTTTGAGAGGGGCCTTGATAAAGTGAAACTCCATAATCCAGTATCAAATTTTCTATAA 1203 0.4572 MNWSRGNVLGHGSSATVSLAASQQCGEAFLAVKSSELSCSGLLQREQRILSSLSSPYIVSYKGCDITRENNKVFYNLFMEYMPLGTLTQATRRRGGRFDEPTIAYYVRQVLQGLEYLHSNGLVHCDIKGSNILIGEDGAKIADFGCAKQAAAVAAPISGTPIFMSPEVARGEEQGYACDIWALGCTVIEVASGVSPWLNAGDPISILYKIAYSGEVPEIPGFLSEEAKDFLGKCLRRNPKERWTAGQLLKHPFVGELNSNSKQQQIHESNSSSPTSILEQSFWSSEEESSSESLSNLLHKHTSFENSPAVRIKRLAVSSGDPKWIEDENWITTIGKEEGSEASPSNNSKESEKINVISSRISDYFWDNYEFRDVRIKTSSFIFERGLDKVKLHNPVSNFL 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele12g0302 400 Gene3D Transferase(Phosphotransferase) domain 1 2 319 - -
Lele12g0302 400 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 3 296 - -
Lele12g0302 400 ProSiteProfiles Protein kinase domain profile. 3 254 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele12g0302 400 SUPERFAMILY Protein kinase-like (PK-like) 3 306 IPR011009 -
Lele12g0302 400 Pfam Protein kinase domain 5 254 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele12g0302 400 FunFam Mitogen-activated protein kinase kinase kinase 17 2 311 - -
Lele12g0302 400 CDD STKc_MAPKKK 2 254 - -
Lele12g0302 400 ProSitePatterns Protein kinases ATP-binding region signature. 9 33 IPR017441 GO:0005524
Lele12g0302 400 ProSitePatterns Serine/Threonine protein kinases active-site signature. 122 134 IPR008271 GO:0004672|GO:0006468
Lele12g0302 400 SMART serkin_6 3 254 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele12g0302 Lele-ChrLele12 2776733 2777935 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele12g0302 1 332 MAP Kinase Kinase Kinase AT1G05100 51.020 2.80e-112 330
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Lele12g0302 Pkinase 7.9e-51 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele29g0421 29 2586889 2590350 Lele12g0302 12 2776733 2777935 CCT
Lele30g0988 30 13377953 13381297 Lele12g0302 12 2776733 2777935 CCT
Lele12g0302 12 2776733 2777935 Lele12g0302 12 2776733 2777935 ECH
Lele09g1018 09 19359576 19360766 Lele12g0302 12 2776733 2777935 hybridization
Lele10g0975 10 21011054 21012256 Lele12g0302 12 2776733 2777935 hybridization