Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele12g0294 ATGGTTTGTCGCATCTATGGCGTTGCCAAGCTCCGCACCTTCATTCTTCTTCTTCTTTTCGGTTTCCCACTTGCATTGTCGGAAATGCAGAATACCAGGTCGTCGGTCTCTTCTTCGGTCAGCTCCGGTCAGATAAACTCCAACTCCGTTCTGGTGGCTCTTCTTGACTCGCATTACACGGAACTCGCTGAGCTTGTGGAGAAGGCTATGCTCTTGCAGACTCTGGAGGATACTGTCGGCAGTCACAATATCACCATATTCGCTCCCAGAAATGAAGCTCTCGAACGCGATCTCGACCCGGAGTTCAAGCGATTCCTTCTCGAACCCGGTAATCTCAAGTCTCTCCAGACTTTACTCATGTTCCATATCATTCCTACCAGAATCGGATCGGATCTTCTGACTCGGACCGGGTTGGCCCGTCACGATACTCTTTGCAATGACTATCTGCATCTTGAGAACAATGGGACTACGGAATGGACAGTGGATCGCGCCAAGATTACCCAACCTGATGCAGTGACCCGACCCGATGGCGTCATTCACGGGATCGAGCGCCTCTTGGTGCCACGTTCCGTACAAGATGAATTCAACCGCCGGCGTAGCCTGCAGTCTATCACGGCGGTGAAGCCAGAGGGAGCACCGGAAGTGGACCCAAGAACTCATCGGCTCAAGAAACCCGCCCCACCAGCGAAACCGGGTTCTCCTCCTGCTTTGCCAATCTACGATGCAATGGCTCCTGGACCCGCACTAGCTCCTGCTCCAGCACCGGGACCAGGCGGACCCCACCACCACTTCAACGGTGAAGCCCAGGTGAAGGATTTCATTCAGACACTTCTCCATTATGGCGGGTACAATGAAATGGCAGATATATTGGTGAATCTAACATCCTTAGCCACCGAAATGGGTCGACTCGTCTCCGAGGGGTACGTGCTCACCGTTTTGGCTCCCAACGATGAGGCCATGGCTAAATTGACTACCGACCAATTGAGTGAACCAGGCGCACCCGAGCAGATTATCTATTACCATCTCATACCGGAGTATCAAACCGAAGAGAGCATGTACAATGCAGTCCGACGGTTCGGTAAGGTCCGGTATGATACCCTACGGTTGCCGCATAAGGTGGTAGCTCAGGAGGCAGATGGATCAGTGAAATTCGGGCAGGGAGACGGGTCGGCGTATTTGTTCGACCCGGATATCTATACGGATGGGCGGATCTCGGTTCAGGGCATCGATAACGTATTGTTGCCACAGGAGGAGGAGACGAAGCCCATTAACAAAACGGTTCAACCCGCTAAGGTCGTGGTCAAGCACAGAAGAGGGAAATTGCTGGAGGCAGCTTGCTGGGTTCTTGGAACCATTGGACAACATGGTAGATTCACCACTTGCCACTGA 1389 0.5284 MVCRIYGVAKLRTFILLLLFGFPLALSEMQNTRSSVSSSVSSGQINSNSVLVALLDSHYTELAELVEKAMLLQTLEDTVGSHNITIFAPRNEALERDLDPEFKRFLLEPGNLKSLQTLLMFHIIPTRIGSDLLTRTGLARHDTLCNDYLHLENNGTTEWTVDRAKITQPDAVTRPDGVIHGIERLLVPRSVQDEFNRRRSLQSITAVKPEGAPEVDPRTHRLKKPAPPAKPGSPPALPIYDAMAPGPALAPAPAPGPGGPHHHFNGEAQVKDFIQTLLHYGGYNEMADILVNLTSLATEMGRLVSEGYVLTVLAPNDEAMAKLTTDQLSEPGAPEQIIYYHLIPEYQTEESMYNAVRRFGKVRYDTLRLPHKVVAQEADGSVKFGQGDGSAYLFDPDIYTDGRISVQGIDNVLLPQEEETKPINKTVQPAKVVVKHRRGKLLEAACWVLGTIGQHGRFTTCH 462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele12g0294 462 SUPERFAMILY FAS1 domain 50 189 IPR036378 -
Lele12g0294 462 ProSiteProfiles FAS1/BIgH3 domain profile. 46 186 IPR000782 -
Lele12g0294 462 PANTHER FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 16 5 460 IPR044654 -
Lele12g0294 462 MobiDBLite consensus disorder prediction 227 241 - -
Lele12g0294 462 FunFam Fasciclin-like arabinogalactan protein 16 265 416 - -
Lele12g0294 462 Gene3D FAS1 domain 50 189 IPR036378 -
Lele12g0294 462 ProSiteProfiles FAS1/BIgH3 domain profile. 270 398 IPR000782 -
Lele12g0294 462 MobiDBLite consensus disorder prediction 202 260 - -
Lele12g0294 462 Pfam Fasciclin domain 58 188 IPR000782 -
Lele12g0294 462 Pfam Fasciclin domain 295 415 IPR000782 -
Lele12g0294 462 SMART fasc_3 311 416 IPR000782 -
Lele12g0294 462 SMART fasc_3 85 189 IPR000782 -
Lele12g0294 462 SUPERFAMILY FAS1 domain 249 416 IPR036378 -
Lele12g0294 462 Gene3D FAS1 domain 289 415 IPR036378 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele12g0294 Lele-ChrLele12 2669191 2671602 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele31g1139 31 18036311 18041910 Lele12g0294 12 2669191 2671602 CCT
Lele32g0385 32 2386235 2391359 Lele12g0294 12 2669191 2671602 CCT
Lele09g1029 09 19469420 19472018 Lele12g0294 12 2669191 2671602 hybridization
Lele10g0982 10 21113995 21116420 Lele12g0294 12 2669191 2671602 hybridization