Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele12g0290 ATGTTTGGGAGGGCACCCAAAAGAAGTGACAACACCAAGTACTATGAGATCCTGGGCGTCTCTAAGAACGTATCCCAGGATGATTTGAAGAAGGCTTACAAAAAAGCCGCCATAAAGAATCACCCCGACAAGGGCGGTGATCCCGAGAAGTTCAAAGAGCTGGCCCACGCTTATGAGGTTCTGAGTGACCCTGAAAAACGTGAAATATACGATGAATATGGTGAAGATGCACTCAAGGAAGGAATGGGCGGAGGCGGAGGTCACGATCCGTTTGACATATTTCAATCTTTCTTTGGCGGGAGTCCTTTCGGAGGTGGTAGCAGTAGAGGACGAAGGCAAAGGCGGGGTGAAGATGCGGTTCACCCCCTCAAGGTCTCTTTGGAGGACCTTTACCTTGGGACTTCTAAGAAGCTTTCTCTGTCACGAAATGTCTTATGTTCAAAGTGCAATGGGAAAGGTTCAAAATCTGGTGCTTCAATGAAGTGTGCGGGTTGTCAAGGTACTGGTATGAAGGTTTCTATTAGGCATCTCGGCCCCTCTATGATACAGCAAATGCAGCATCCTTGCAATGAATGTAAGGGTACTGGAGAATCTATCAATGATAAGGACCGTTGCCCACAGTGCAAAGGAGAGAAGGTTGCTCAAGAGAAGAAAGTACTTGAAGTTATTGTGGAGAAGGGAATGCAGAGTGGACAGAAAATTACATTCCCTGGTGAAGCAGATGAGGCGCCAGACACAATAACAGGGGACATAGTTTTTGTCCTTCAGCAGAAGGAACATCCCAAGTTTCGGAGGAAGGGTGAAGATCTTTTTGTAGAGCACACTTTGTCCCTTACGGAGGCTTTATGTGGCTTTCAATTTGTGCTGACTCACCTTGATGGCAGGCAACTCCTCATCAAATTAAATCCAGGGGAAGTTGTCAAGCCTGACTCGTACAAGGCAATTAATGACGAAGGAATGCCGATGTACCAGAGGCCATTCATGAAGGGAAAGCTTTACATTCACTTTACTGTAGAATTCCCAGATTCTCTGGGTCCTGATCAAGTCAAAGCTTTGGAGGCTGTTCTGCCGCCTGGGCCTTCAACACAGTTGACGGATATGGAGCTCGATGAATGTGAGGAGACGACACTTCATGATGTCAATATTGAGGAGGAGATGAGGAGGAAGCAACAAGCACAACAAGAGGCATATGATGAAGATGAGGATATGCATGGTGGTGCTCAGAGAGTGCAATGCGCCCAGCAGTGA 1248 0.4704 MFGRAPKRSDNTKYYEILGVSKNVSQDDLKKAYKKAAIKNHPDKGGDPEKFKELAHAYEVLSDPEKREIYDEYGEDALKEGMGGGGGHDPFDIFQSFFGGSPFGGGSSRGRRQRRGEDAVHPLKVSLEDLYLGTSKKLSLSRNVLCSKCNGKGSKSGASMKCAGCQGTGMKVSIRHLGPSMIQQMQHPCNECKGTGESINDKDRCPQCKGEKVAQEKKVLEVIVEKGMQSGQKITFPGEADEAPDTITGDIVFVLQQKEHPKFRRKGEDLFVEHTLSLTEALCGFQFVLTHLDGRQLLIKLNPGEVVKPDSYKAINDEGMPMYQRPFMKGKLYIHFTVEFPDSLGPDQVKALEAVLPPGPSTQLTDMELDECEETTLHDVNIEEEMRRKQQAQQEAYDEDEDMHGGAQRVQCAQQ 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele12g0290 415 PANTHER DNAJ-LIKE-2, ISOFORM A-RELATED 11 396 IPR044713 GO:0006457|GO:0030544
Lele12g0290 415 Pfam DnaJ domain 13 71 IPR001623 -
Lele12g0290 415 SUPERFAMILY DnaJ/Hsp40 cysteine-rich domain 143 215 IPR036410 -
Lele12g0290 415 CDD DnaJ 14 63 IPR001623 -
Lele12g0290 415 Gene3D - 260 342 - -
Lele12g0290 415 Gene3D - 146 212 - -
Lele12g0290 415 Gene3D - 109 258 - -
Lele12g0290 415 SMART dnaj_3 12 66 IPR001623 -
Lele12g0290 415 Coils Coil 382 402 - -
Lele12g0290 415 MobiDBLite consensus disorder prediction 378 415 - -
Lele12g0290 415 Hamap Chaperone protein DnaJ [dnaJ]. 10 389 IPR012724 GO:0005524|GO:0006457|GO:0009408|GO:0051082
Lele12g0290 415 ProSitePatterns Nt-dnaJ domain signature. 51 70 IPR018253 -
Lele12g0290 415 CDD DnaJ_zf 146 212 IPR001305 GO:0031072|GO:0051082
Lele12g0290 415 FunFam Chaperone protein dnaJ 3 213 253 - -
Lele12g0290 415 Pfam DnaJ C terminal domain 121 341 IPR002939 -
Lele12g0290 415 ProSiteProfiles dnaJ domain profile. 13 74 IPR001623 -
Lele12g0290 415 Pfam DnaJ central domain 146 212 IPR001305 GO:0031072|GO:0051082
Lele12g0290 415 SUPERFAMILY HSP40/DnaJ peptide-binding domain 263 352 IPR008971 GO:0006457|GO:0051082
Lele12g0290 415 FunFam Chaperone protein dnaJ 3 287 358 - -
Lele12g0290 415 CDD DnaJ_C 117 344 - -
Lele12g0290 415 MobiDBLite consensus disorder prediction 378 406 - -
Lele12g0290 415 SUPERFAMILY HSP40/DnaJ peptide-binding domain 117 261 IPR008971 GO:0006457|GO:0051082
Lele12g0290 415 Gene3D DnaJ domain 10 108 IPR036869 -
Lele12g0290 415 FunFam dnaJ protein homolog 10 108 - -
Lele12g0290 415 SUPERFAMILY Chaperone J-domain 8 106 IPR036869 -
Lele12g0290 415 ProSiteProfiles Zinc finger CR-type profile. 133 217 IPR001305 GO:0031072|GO:0051082
Lele12g0290 415 FunFam DnaJ subfamily A member 2 146 212 - -
Lele12g0290 415 PRINTS DnaJ domain signature 46 66 IPR001623 -
Lele12g0290 415 PRINTS DnaJ domain signature 15 33 IPR001623 -
Lele12g0290 415 PRINTS DnaJ domain signature 66 85 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele12g0290 Lele-ChrLele12 2608130 2610263 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele12g0290 5 73 C2H2 Transcription Factor Family AT1G74250 42.308 1.20e-11 64.7