Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele12g0280 ATGGCAGAAATCGAAGTTCCTCAATATTTCTTGTGTCCTATTTCTCTCGAGATCATGAAAGATCCTGTAACAACCGTAACAGGTATAACCTACGACAGAGACAGCATCGAACAGTGGTTGCTGACGGCAAAGGAGAGGAAATGCCCAGTCACGAAGCAGCCATTGCCACCTGACTCAGCCTTGACTCCTAACTCTACCTTACTCAGGCTAATCCAAGCTTGGTCCTCACAAATTGCTCAAAACAGCGCCGTTCAGTTTCCGTCCCCAAAACCTCTCCTTACCTCCTTCCACGTTTACAAGCTCATTTCTGATCTTCAGATTCCTCATCTGTATCAAACCACATTGAGAAAAATCGAATCTTTGGCCAAACACAGCAAAAGCAACAGAAGATGCATGGTGGAATCTGGAGCACTCGACGCCATGGTTTCCATTATTACTCAGAGTTTCATGGAAGGTATAACAAATTGTCTCGAAGAAGCTTTGAGAATTTTTCGTTTACTCTCTGCTGAATCCTCATCCTCATCCATGGATCACATGAAGTCTCGGTTTTATAAAAACTTTGACATTTTTATCACCTCTTTGAACTGGGCTTTGCAAGTTGACGTGAGCAACAACGTTAATATAGTAAACGAAACAATGCTTTTTGTGAAATTGATCATTGAAACCGCAGATTCAGTCCTTCTGGGAAACTTAGATGTTGAATTTTTCAGAGGATTAACAAAGGTGCTAAAAAACAGAAGAGTCTCAGAACAAGCTATCAAATCAGCCTTGGAAGTTCTCATAGAAACGTGCCCATTAGGAAGAAACAGATCGAAAATCGTAGAATCGGGTGCAGTCTCTGAATTAATTGATCTTGAGCTAGAAAAACCAACGAAGAAGATAACGGAGTTAGGGTTCAACCTTCTGGCACATCTATGTTCTTGTGCTGAAGGGAGAGAACAGTTTGTGCAACACGCAGCGGGAATCGCTGTTATATCTAAGAGGATTCTGAGGGTTTCGAATGCAATAGACGATCGAGCTGTTCATATACTTGCGTTGATAGCTAAGTACTCGTCTTCAAACGATGTCGTTTTGGAGATGTTGAGGGTGGGAGCTGTGTCCAAGATTTGCATGGTGATGCAAGCTGATTGTGCTTCGTATTTGAAGGAGAAAGCAAGAAGTATCCTTAGGTTACACTCCAAAACTTGGAATAATTCTCCATGCATTCAAGTATATTTTCTAACCAGACACCAAAGGTGA 1239 0.4181 MAEIEVPQYFLCPISLEIMKDPVTTVTGITYDRDSIEQWLLTAKERKCPVTKQPLPPDSALTPNSTLLRLIQAWSSQIAQNSAVQFPSPKPLLTSFHVYKLISDLQIPHLYQTTLRKIESLAKHSKSNRRCMVESGALDAMVSIITQSFMEGITNCLEEALRIFRLLSAESSSSSMDHMKSRFYKNFDIFITSLNWALQVDVSNNVNIVNETMLFVKLIIETADSVLLGNLDVEFFRGLTKVLKNRRVSEQAIKSALEVLIETCPLGRNRSKIVESGAVSELIDLELEKPTKKITELGFNLLAHLCSCAEGREQFVQHAAGIAVISKRILRVSNAIDDRAVHILALIAKYSSSNDVVLEMLRVGAVSKICMVMQADCASYLKEKARSILRLHSKTWNNSPCIQVYFLTRHQR 412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele12g0280 412 SUPERFAMILY RING/U-box 4 77 - -
Lele12g0280 412 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 85 IPR013083 -
Lele12g0280 412 CDD RING-Ubox_PUB 10 53 IPR045210 -
Lele12g0280 412 Gene3D - 92 400 IPR011989 -
Lele12g0280 412 SUPERFAMILY ARM repeat 112 391 IPR016024 -
Lele12g0280 412 Pfam U-box domain 6 77 IPR003613 GO:0004842|GO:0016567
Lele12g0280 412 SMART Ubox_2 9 74 IPR003613 GO:0004842|GO:0016567
Lele12g0280 412 PANTHER WDSAM1 PROTEIN 3 403 IPR045185 GO:0061630
Lele12g0280 412 ProSiteProfiles U-box domain profile. 5 81 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele12g0280 Lele-ChrLele12 2437242 2438480 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele12g0280 3 402 U-box Gene Family AT2G35930 38.119 6.87e-91 278