Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele12g0252 ATGCCACGAGGAAAGGCAAATTCTTCATCAGTTGCAAAGCCATCTGAACCTGAAAAGCCAACAGAGTCTGAGGAGAGGGTTGATCTCGATGAAGAAAATGATCCTGAGGAAACGATGGAAGAAGAAATTGAATATGAGGAAGTAGAAGAAGAAGAGGAAATGGAAGAGATAGAAGAGGAGGTAGAAGAAGAGGAGGAAGAGGAAGAAGTTGAAGAAGAAGAAGATGATGATGCTGATGCTGATCATGCCAATGACACTGATGCCATGCAAAACATTAGCAGTGACGAGGCGAAGGTGGAAGATGAGGATGAGAAGAAAAAGCATGCAGAACTTCTCTCTCTTCCTCCTCACGGGTCTGAAGTTTACATTGGTGGCATTCCTCCTGATGCCTCATGTGAGGATTTGAAGGCTTTTTGTGAGTCTATCGGGGAAGTTACAGAGGTTAGGGTTATGAAAGGAAAAGATTCTGCTGAAAACAAGGGCTTTGGTTTTGTGACCTTCAAAAGTGTGGAATTGGCTTCTAAAGCCATTGAAGAGCTGAATAATAAACAATTTAAGGGTAAAAAGATAAAATGTTCATCGTCTCAAGCAAAACACCGACTTTTCATTGGTAATGTTCCTAGAAGCTGGGGAGATGAGGATCTAAGGAAGGTTGTAACTGAGATTGGGCCTGGAGTTACAACTGTGGAACTAGTCAAGGATATGAAGCACCCAACAAACAATCGTGGTTTTGCATTTGTCAACTATTATAATCATGCATGTGCTGAATATTCAAGGAAAAAGATGATGGATTCAAAATTCAAGCTAGGTAATAATTCTCCGACAGTGAGCTGGGCTGACCCTAAAAATGCTGATTCATCTTCTACATCTCAGGTGAGGGCAGTATATGTCAAGAACTTACCTAAGGATGTGACTGGAGATGAACTAAAGAAACTTTTTGAACACCATGGGAAGATTTCAAAGGTGGTTCTGCCACCAGCGAAGTCTGGGCAAGAAAAGAACAGAATTGGCTTTGTTCATTTTGTGGAGAAGTCAAGTGCTATGAAAGCACTTAAAAACACTGAAAGATATGAATTAAATGGTCAAGTTTTGGAGTGTTCTCTAGCAAAGCCACAGGTAGATAAGTCTGGAGGATCAAATACACCGAAAGCAGGATTGCTTCCTGGCTACCCTCCCCATGTTGGCTATAATTTGATTGGAGGTGCCTATGGCGGGCTAGGTGCTGGATATGGTGCTGCAGGTCTTGCACAGGTGGCACATCCCATGATACATGGAAGGGGTCCAGCTCCAGCTGGAATGTCCATGATGCCCATGCTTTTGCCTGATGGACGAATTGGATATGTCCTGCAACAACCAGGAATGCAGCCGCAGACCCCACCTGTACAACCGAGAGGTGGCAGAAATGGAGGGAGTGGCAGCAGGAACTTTGGCAGTTCAAGCAAGGGAAGGCACAACAATTCTAGTGGCCAAGGGCGCAGATATCGTCCATATTAG 1494 0.4391 MPRGKANSSSVAKPSEPEKPTESEERVDLDEENDPEETMEEEIEYEEVEEEEEMEEIEEEVEEEEEEEEVEEEEDDDADADHANDTDAMQNISSDEAKVEDEDEKKKHAELLSLPPHGSEVYIGGIPPDASCEDLKAFCESIGEVTEVRVMKGKDSAENKGFGFVTFKSVELASKAIEELNNKQFKGKKIKCSSSQAKHRLFIGNVPRSWGDEDLRKVVTEIGPGVTTVELVKDMKHPTNNRGFAFVNYYNHACAEYSRKKMMDSKFKLGNNSPTVSWADPKNADSSSTSQVRAVYVKNLPKDVTGDELKKLFEHHGKISKVVLPPAKSGQEKNRIGFVHFVEKSSAMKALKNTERYELNGQVLECSLAKPQVDKSGGSNTPKAGLLPGYPPHVGYNLIGGAYGGLGAGYGAAGLAQVAHPMIHGRGPAPAGMSMMPMLLPDGRIGYVLQQPGMQPQTPPVQPRGGRNGGSGSRNFGSSSKGRHNNSSGQGRRYRPY 497
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele12g0252 497 MobiDBLite consensus disorder prediction 27 82 - -
Lele12g0252 497 Gene3D - 200 280 IPR012677 -
Lele12g0252 497 SUPERFAMILY RNA-binding domain, RBD 116 371 IPR035979 GO:0003676
Lele12g0252 497 MobiDBLite consensus disorder prediction 449 497 - -
Lele12g0252 497 Gene3D - 281 385 IPR012677 -
Lele12g0252 497 CDD RRM_SF 121 193 - -
Lele12g0252 497 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 295 364 IPR000504 GO:0003723
Lele12g0252 497 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 121 191 IPR000504 GO:0003723
Lele12g0252 497 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 201 266 IPR000504 GO:0003723
Lele12g0252 497 FunFam RNA recognition motif-containing protein 21 199 - -
Lele12g0252 497 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 293 371 IPR000504 GO:0003723
Lele12g0252 497 SUPERFAMILY RNA-binding domain, RBD 200 284 IPR035979 GO:0003676
Lele12g0252 497 MobiDBLite consensus disorder prediction 451 497 - -
Lele12g0252 497 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 9 481 - -
Lele12g0252 497 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 119 197 IPR000504 GO:0003723
Lele12g0252 497 Gene3D - 39 199 IPR012677 -
Lele12g0252 497 MobiDBLite consensus disorder prediction 94 112 - -
Lele12g0252 497 SMART rrm2_1 294 367 IPR003954 GO:0003676
Lele12g0252 497 SMART rrm2_1 120 193 IPR003954 GO:0003676
Lele12g0252 497 MobiDBLite consensus disorder prediction 1 112 - -
Lele12g0252 497 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 199 281 IPR000504 GO:0003723
Lele12g0252 497 Coils Coil 38 81 - -
Lele12g0252 497 SMART rrm1_1 294 367 IPR000504 GO:0003723
Lele12g0252 497 SMART rrm1_1 200 277 IPR000504 GO:0003723
Lele12g0252 497 SMART rrm1_1 120 193 IPR000504 GO:0003723
Lele12g0252 497 FunFam RNA-binding (RRM/RBD/RNP motifs) family protein 200 280 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele12g0252 Lele-ChrLele12 2208680 2212024 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele12g0252 119 375 Eukaryotic Initiation Factors Gene Family AT1G71770 26.667 1.30e-18 87.0