Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele12g0247 ATGTGTCCCAGCTCTTTGCTTAAAGATACCAAGGGAGGGATGGGCCCTGAGTTTTTGGGCCAAAGAATGACAGGCTTTAAAGATGCTCTAGTCAATTGGAATATTTCTTTTGAGTTCTCCATAATATACAACCAATCAACACTTACTTTCATGCATGGCTCTTCCATCATGCAGCTTATAGAAATATTTAACTTGAGGAAGGATAAAAATCAGGGTTCTAATAACCTCTCAGGATTTTTCATGTATCCAAGAGCTTCGGAGAATAGAGTCCAACAGGTGGGATCTATGTATCATAATCAGCAGAATCACGCAAAGAACATCCGTTCTTCTTCTTCTTCTTCCAGCAGAATGCCTATTCCTTCTGAGAGGCATTTGTTCCTGCAAAGTGGAAATGGGTCTGGAGATTCTGGACTTGTTCTTTCAACTGATGCTAAACCCAGGTTGAAATGGACACCAGATCTCCATGCCAGATTTATTGAAGCAGTTAACCAGCTGGGAGGAGCTGACAAAGCAACTCCAAAAACAGTAATGAAACTCATGGGGATTCCAGGGCTTACTTTATATCATCTTAAGAGCCATCTTCAGTACAGACTGAGCAAGAATCTGCATGGACAAAGTAGCAATGCAACACAACACAAAATCACAACAAATGCAAGTGCCGTTAGTGGAGAAAGACTTTCTGAAGCAAATGGAACCCACAATCATATGAACAATCTAACCCTTGGGCTGCAGCAGCAAGCCAATAATAACAAAGATTTACATATAAGCGAGGCGTTGCAGATTCAGATTGAGGTGCAGAGAAGACTAAATGAACAACTTGAGGTTCAGAGACACTTGCAGCTCCGAATAGAGGCACAAGGGAAATACCTGCAGGCTGTGCTTGAGAAAGCTCAGGAAACGCTTGGAAGACAGAATTTAGGAATAGTAGGTCTTGAAGCTGCCAAAGTTCAACTCACAGAACTAGTGTCCAAAGTATCTTCTCAATGTCTGACTTCTGCTTTTTCAGAGTTGAAGGAATTAAACACATTTAATATCCCCGAGATCAACAGAACAAGAACCAACCAACCCAATGACTGTTCCAGGGACAGTAGCCTCACATCCTGCGAGGGATCTCAAAGGGATCAGGAAAATATTCCAATTGGTGCTGGCATCTGCTTAACGAGACCTTTTAATGGCGGCCACACTTTCATGGAACCAAACAAGGACGCAGCAGCTGAGGTGAAAAAGAATAATAATAATAATTTTCTCAACCGTTTGGGCAAGAATATATTAGAAAGAAGTACTACTGCTGGCAACTTAACAATGAGCATTGGAGTTGAAGGAGAAACGAGAAATGGAAGCAGCATCTATCCTGAGAGAATAATAATGGGGAGAGAATCAGATAATGATCAGTTCCAGTATCGAAGCAGCAATAATAGAACAGAAGGTATGGAATTAGCAGTGGACGAAAAAGTTTCTGGAGATTGTAGATTGCCGTACTTTGCTACACCAAGATTAGACCTTAACACCCACCAAGAAAATAACGATGGTGCAGCGAGTTGCAAACAACTGGACCTGAATGGATTCAGTTGGAACTGA 1578 0.4163 MCPSSLLKDTKGGMGPEFLGQRMTGFKDALVNWNISFEFSIIYNQSTLTFMHGSSIMQLIEIFNLRKDKNQGSNNLSGFFMYPRASENRVQQVGSMYHNQQNHAKNIRSSSSSSSRMPIPSERHLFLQSGNGSGDSGLVLSTDAKPRLKWTPDLHARFIEAVNQLGGADKATPKTVMKLMGIPGLTLYHLKSHLQYRLSKNLHGQSSNATQHKITTNASAVSGERLSEANGTHNHMNNLTLGLQQQANNNKDLHISEALQIQIEVQRRLNEQLEVQRHLQLRIEAQGKYLQAVLEKAQETLGRQNLGIVGLEAAKVQLTELVSKVSSQCLTSAFSELKELNTFNIPEINRTRTNQPNDCSRDSSLTSCEGSQRDQENIPIGAGICLTRPFNGGHTFMEPNKDAAAEVKKNNNNNFLNRLGKNILERSTTAGNLTMSIGVEGETRNGSSIYPERIIMGRESDNDQFQYRSSNNRTEGMELAVDEKVSGDCRLPYFATPRLDLNTHQENNDGAASCKQLDLNGFSWN 525
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele12g0247 525 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 104 427 IPR044848 GO:0003700
Lele12g0247 525 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 145 197 IPR006447 GO:0003677
Lele12g0247 525 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 142 202 IPR017930 -
Lele12g0247 525 MobiDBLite consensus disorder prediction 351 374 - -
Lele12g0247 525 Pfam MYB-CC type transfactor, LHEQLE motif 254 300 IPR025756 -
Lele12g0247 525 SUPERFAMILY Homeodomain-like 144 196 IPR009057 -
Lele12g0247 525 FunFam Two-component response regulator 141 202 - -
Lele12g0247 525 Gene3D - 144 201 - -
Lele12g0247 525 Coils Coil 256 276 - -
Lele12g0247 525 Pfam Myb-like DNA-binding domain 147 196 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele12g0247 Lele-ChrLele12 2185458 2188782 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele12g0247 177 525 G2-like Transcription Factor Family AT3G04030 47.042 1.87e-70 226
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Lele12g0247 Myb_DNA-binding 1.3e-06 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele09g1065 09 19859189 19861185 Lele12g0247 12 2185458 2188782 hybridization
Lele10g1033 10 21661922 21664036 Lele12g0247 12 2185458 2188782 hybridization