Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele12g0245 ATGATTATTACATTGAGGCGTCTAGCTCAAAACAGGGAGGCAGCAAGGAAAAGCCGTCTCAGAAAAAAGGCTTACGTACAGCAGCTAGAGTCCAGTAGAATAAAGCTTTCCCAGCTGGAACAAGATCTTCAAAGAGCACGCTCTCAGGGACTATTGATTGGCTGTGGTGGGGCTACTGCAAGCACTAATATAAGTTCCGGTGCAGCAATATTTGACATGGAATATGGGAGATGGTTGGAAGAAGACCAGCAGCAGATGGAGGAGCTGCGGCGGAGATTGGAGGCAGCGGTGCCGGACGATGAACTGAGAGTGATGGTGGAGAGTTATCTGAGACACTACGACGAGATCTTTGAACTGAAGGGAGTGGCGGCAAAATCAGACGTGTTTCACGTCATGAACGGAATGTGGACCACCCCTGCCGAGCGTTGCTTCCTCTGGATCGCCGGCTTCAGGCCCTCCGATCTCATCGGGATGTTGATACAGCAGTTAGAGCCGGTGGCGGAGCAGCAAATACTGAGGATGTGTGAGCTGAGGCAGTCGACACAGGAATCGGAGGAGGCTCTGACTCAAGGGCTCGACCAGCTTCAGCATTCTCTCCTTCACACCGTCGTCGGAGGCCTCACCGTCGACGGCGTTCATCAGATGTTTCTGGCTATGACCAAGCTTTCGAATCTTGAAGCCTTTATACGCCAGATTAATTTGGTAAATTTTGAACTGACTGAATTATTATCCATGCATGTTGATGAATTGAAGGCTGATAATTTGAGACAGCAAACACTTCACCAATTGTGTCGACTCCTAACAGTTCGTCAAGCAGCAAAATCTTTTCTTGTGATTGGAGAATACTATGGTCGTCTTCGAGCTCTTGGTTCTCTTTGGGCATCCCGACCACGAGAGGCATTGATCAACGATGAGACATGCCACCAAATAGCAACGACCATGCCAATAGTTCAGTCTTTCCAGAATCATTTCTCCAGTTTCTGA 984 0.4878 MIITLRRLAQNREAARKSRLRKKAYVQQLESSRIKLSQLEQDLQRARSQGLLIGCGGATASTNISSGAAIFDMEYGRWLEEDQQQMEELRRRLEAAVPDDELRVMVESYLRHYDEIFELKGVAAKSDVFHVMNGMWTTPAERCFLWIAGFRPSDLIGMLIQQLEPVAEQQILRMCELRQSTQESEEALTQGLDQLQHSLLHTVVGGLTVDGVHQMFLAMTKLSNLEAFIRQINLVNFELTELLSMHVDELKADNLRQQTLHQLCRLLTVRQAAKSFLVIGEYYGRLRALGSLWASRPREALINDETCHQIATTMPIVQSFQNHFSSF 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele12g0245 327 Gene3D - 4 51 - -
Lele12g0245 327 SUPERFAMILY Leucine zipper domain 5 45 IPR046347 GO:0003700|GO:0006355
Lele12g0245 327 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 6 21 IPR004827 GO:0003700|GO:0006355
Lele12g0245 327 FunFam BZIP family transcription factor 3 51 - -
Lele12g0245 327 Pfam bZIP transcription factor 6 44 IPR004827 GO:0003700|GO:0006355
Lele12g0245 327 PANTHER TRANSCRIPTION FACTOR TGA9 4 299 - -
Lele12g0245 327 Pfam Seed dormancy control 85 159 IPR025422 GO:0006351|GO:0043565
Lele12g0245 327 SMART brlzneu 4 64 IPR004827 GO:0003700|GO:0006355
Lele12g0245 327 Coils Coil 22 49 - -
Lele12g0245 327 ProSiteProfiles DOG1 domain profile. 68 296 IPR025422 GO:0006351|GO:0043565
Lele12g0245 327 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 6 45 IPR004827 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele12g0245 Lele-ChrLele12 2163328 2167282 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele12g0245 4 327 bZIP Transcription Factor Family AT1G08320 62.037 2.05e-143 407
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Lele12g0245 DOG1 2.9e-29 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele12g0245 12 2163328 2167282 Lele29g0351 29 2151639 2154472 CCT
Lele12g0245 12 2163328 2167282 Lele30g1056 30 13830253 13833099 CCT
Lele12g0245 12 2163328 2167282 Lele31g1189 31 18331239 18334125 CCT
Lele12g0245 12 2163328 2167282 Lele32g0336 32 2100170 2102960 CCT
Lele09g1067 09 19878233 19884201 Lele12g0245 12 2163328 2167282 hybridization
Lele10g1037 10 21692241 21696375 Lele12g0245 12 2163328 2167282 hybridization