Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele12g0242 ATGAATTTGAGGGAATATTACAGTGTACATGACAAGAGAGTGAACTTTCATACTCCAACTTTCTTTGAATGGCTCAAACCATCTTCATATCCTCCTCCTCCTCCTCCTTCATCATCATCTTCTGTGATTCATCATCAAGAGACTATTCAGTTTTTGCCAATTTTAACTGAAAAGCCCTCAAAAGATCAGGAAGGCTATAGGACTATTGGAGTAATTAAAGAGAAGAACGACCACGACGTAGATGAGCAAGTGACTGTGGCTTTGCACATAGGACTACCTAACACTCAATGTTTTGAGGATGATGATGATCAGAAAAATAAGAAAGTTTCAGATGTGAAGGAAGAAAAAGAAGTGGTGAATAATAAAAGCTTTCAAGGTTGCTCTAAGAATTCTAACACAGAGAGAAGGTTCTGGATACCAACTCCAGCACAGATCCTTGTTGGGCCGATGCAGTTTACTTGCTCAATTTGCAGCAAGACCTTCAATAGGTATAATAACTTGCAGATGCATATGTGGGGTCATGGATCAGAGTATAGAAAAGGATCAGAATCTTTAAAAGGGACACAACCCGCAGCAATGTTGAGGCTGCCATGTTACTGTTGTGCACAAGGCTGCAAGAACAACATAAACCATCCAAGTGGCAAGCCTCTTAAGGACTTCAGAACGCTACAAACACACTTCAAGAGGAAGCATGGTTCTAAGCCTTTTGTCTGCAGAAAATGCGCCAAAACCTTTGCCGTTAAAGGAGATTGGAGGACTCACGAGAAGAGCTGTGGCAAGTTCTGGTATTGCACTTGTGGTTCTGATTTCAAGCACAAGAGATCTCTCAAAGATCATATCAGATCCTTTGGAAAAGGTCACTCCCCTTGTTTTGATGAAGATGATCACAAGGAATATTCCATCCCTAGTCCATCTGCCTCTGAAGAATCTTAA 933 0.4105 MNLREYYSVHDKRVNFHTPTFFEWLKPSSYPPPPPPSSSSSVIHHQETIQFLPILTEKPSKDQEGYRTIGVIKEKNDHDVDEQVTVALHIGLPNTQCFEDDDDQKNKKVSDVKEEKEVVNNKSFQGCSKNSNTERRFWIPTPAQILVGPMQFTCSICSKTFNRYNNLQMHMWGHGSEYRKGSESLKGTQPAAMLRLPCYCCAQGCKNNINHPSGKPLKDFRTLQTHFKRKHGSKPFVCRKCAKTFAVKGDWRTHEKSCGKFWYCTCGSDFKHKRSLKDHIRSFGKGHSPCFDEDDHKEYSIPSPSASEES 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele12g0242 310 ProSiteProfiles Zinc finger C2H2 type domain profile. 152 179 IPR013087 -
Lele12g0242 310 SMART c2h2final6 152 174 IPR013087 -
Lele12g0242 310 SMART c2h2final6 199 231 IPR013087 -
Lele12g0242 310 SMART c2h2final6 236 256 IPR013087 -
Lele12g0242 310 Gene3D Classic Zinc Finger 232 290 - -
Lele12g0242 310 SUPERFAMILY beta-beta-alpha zinc fingers 138 175 IPR036236 -
Lele12g0242 310 ProSitePatterns Zinc finger C2H2 type domain signature. 154 174 IPR013087 -
Lele12g0242 310 Gene3D Classic Zinc Finger 151 174 - -
Lele12g0242 310 FunFam Zinc finger protein WIP2 205 287 - -
Lele12g0242 310 PANTHER ZINC FINGER PROTEIN WIP2 28 297 IPR043584 GO:0003700|GO:0010468
Lele12g0242 310 SUPERFAMILY beta-beta-alpha zinc fingers 222 256 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele12g0242 Lele-ChrLele12 2114758 2117058 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele12g0242 8 289 C2H2 Transcription Factor Family AT1G08290 54.848 2.45e-109 319
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lele12g0242 zf-C2H2_6 3.1e-05 CL0361