Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele12g0215 ATGGAGTTCTGGGGTATTATTTCGCTATTCTCTTGTGTTGAGGTTAAAGCTGGGGAGTCTGTTAAAGTTGATCCTCAAGAGTTTGATGCCTACATTCATCTTTCTCAGGCTGCCCTTGGTGAGACAAAGAAAGATAAGGGAGCTGAACATGTGGTTCTTTACTTAAAATTTGGTGACCAAAAGCTTGTTTTGGGAACCCTTTCTAAGGATAACTTTCCCCAGATATCGTTTGACTTAGTTTTGGAAAAGGAGTTTGAGCTCTCCCACAATTCAAAAAATGGCAGCGTCTTTTACTGTGGATATAAAGCTGAACTTCCTGATGAAGAATATCCTTTGGCCGCTCAAACATGAAAAGCTGATGCTAAGACTACCCTAGCTAAGATTGCAGCATCCAAAAAAAGTGATGCCAGTGCTAATGATTCCAAAAAGCAAGGCAAGGTTGATCCAAAGAATGAGGATGACGATTCTGAAGATGATGAATCTGATGAAGGCGGAGATTCTGATGAGGATATGCTGGATGGTGAAAGTGATAGTGATGACGAGAGTGATGATGAGGAGACTCCCGAGAAGCCGGATCTGAGTAAGAAGAGATCCAATGATTCTGCATTAAAAATTCCAGTTTCTGCCAAGAAAGCTAAAACTGGTACTCCTGAAAAGAAAGATGCTAAGAAAGGTGGCCATGCCGCAACTCCTCACCCAATGAAGAAGGGTGGAAAGACTCCTAACGGTGATGCCAAGGAGCCTAAGTCTGGTGGACACTTGTCCTGCAAACCTTGCAGCAAGACTTTCAACTCTGGAAGTGGTCTTCAACAACATAAAAAGGCAAAGCACAGGGCTTTTTTCATAATTGAGGGAATTACATATGGAATTAGTATTCGTGAAGCTTTTGAATGCATTTCTTGCAGTATTTGA 912 0.4178 MEFWGIISLFSCVEVKAGESVKVDPQEFDAYIHLSQAALGETKKDKGAEHVVLYLKFGDQKLVLGTLSKDNFPQISFDLVLEKEFELSHNSKNGSVFYCGYKAELPDEEYPLAAQTXKADAKTTLAKIAASKKSDASANDSKKQGKVDPKNEDDDSEDDESDEGGDSDEDMLDGESDSDDESDDEETPEKPDLSKKRSNDSALKIPVSAKKAKTGTPEKKDAKKGGHAATPHPMKKGGKTPNGDAKEPKSGGHLSCKPCSKTFNSGSGLQQHKKAKHRAFFIIEGITYGISIREAFECISCSI 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele12g0215 303 MobiDBLite consensus disorder prediction 213 228 - -
Lele12g0215 303 Pfam Nucleoplasmin-like domain 13 101 IPR041232 -
Lele12g0215 303 MobiDBLite consensus disorder prediction 135 268 - -
Lele12g0215 303 ProSitePatterns Zinc finger C2H2 type domain signature. 256 277 IPR013087 -
Lele12g0215 303 FunFam Histone deacetylase HDT1 1 107 - -
Lele12g0215 303 MobiDBLite consensus disorder prediction 152 187 - -
Lele12g0215 303 ProSiteProfiles Zinc finger C2H2 type domain profile. 254 277 IPR013087 -
Lele12g0215 303 MobiDBLite consensus disorder prediction 136 151 - -
Lele12g0215 303 Gene3D Nucleoplasmin core domain 3 107 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele12g0215 Lele-ChrLele12 1795490 1798238 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele12g0215 1 272 C2H2 Transcription Factor Family AT3G44750 42.125 1.16e-44 150
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele29g0314 29 1897110 1900429 Lele12g0215 12 1795490 1798238 CCT
Lele30g1094 30 14072131 14075434 Lele12g0215 12 1795490 1798238 CCT
Lele09g1104 09 20210327 20212735 Lele12g0215 12 1795490 1798238 hybridization
Lele10g1071 10 22048581 22050999 Lele12g0215 12 1795490 1798238 hybridization