Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele12g0212 ATGGCGTTGTCGGGGATGAGAGGTCTCTCCGTCTTTATAAGTGATATCCGCAATTGTCAGAACAAAGAGCAGGAAAGGCTCCGGGTCGACAAGGAGCTGGGAAACATCCGAACCCGCTTCAAAAACGATAAGGTTTTGACACCGTATGAAAAGAAGAAATATGTTTGGAAAATGCTATACATATATATGCTTGGGTATGATGTGGAATTTGGTCATATGGAAGCCGTTTCTCTAATATCTGCTCCAAAATATCCAGAAAAGCAGGTTGGGTACATTGTGACATCGTCTTTACTCAACGAGAACCATGACTTTTTGAGACTAGCAATAAATACTGTGCGCAATGATATTATTGGTCGCAATGAAACTTTCCAGTGCCTCGCATTGACTATGGTTGGGAATATAGGTGGAAGAGAGTTTGCCGAGTCCTTAGCACCTGATGTACAGAAGTTGCTGATATCTAGCAGCTGCAGACCGCTTGTGAGAAAAAAAGCTGCTTTGTGTTTACTACGCTTGTATAGGAAAAATCCAGATGTTGTCAATGTAGATGGATGGGCGGATCGGATGGCACAACTTATGGATGAACGAGATCTTGGAGTTTTGACATCTTCTATGAGCCTTCTTGTTGCATTAGTATCTAACAACCATGAAGCATATTGGAGTTGTCTTCCAAAGTGTGTCAAAGTTCTAGAGCGTCTTGCTAGGAACCAGGATGTTCCGCAAGAATATACTTACTATGGTATCCCATCTCCCTGGCTTCAGGTAAAAACAATGAGAGCACTTCAGTATTTTCCTACCATTGAAGATCCAAATACAAGGAGATCTTTGTTTGAGGTCTTACAAAGGATACTGATGGGCACAGATGTTGTGAAAAATGTGAACAAAAACAATGCATCCCATGCTGTTCTTTTTGAAGCACTTGCTCTGGTGATGCATCTTGATGCTGAGAAAGAGATGATGTCTCAATGTGTGGCTCTTCTTGGAAAATTTATTGCTGTCCGGGAGCCAAACATTAGATATCTTGGCTTGGAGAATATGACAAGAATGTTGATGGTTACAGATGTGCAAGATATCATAAAAAGGCATCAAGCTCAGATTATTACCTCATTGAAAGATCCAGATATCAGTATTCGGCGGCGTGCTCTTGATTTACTTTATGGCATGTGTGATGTTTCAAATGCAAAGGATATAGTTGAAGAACTTTTGCAGTATCTCAGCACAGCTGAATTTGCAATGAGAGAGGAATTGTCACTTAAAGCTGCCATTCTTGCTGAGAAGTTTGCTCCAGATCTTTCATGGTATGTTGATGTCATTCTTCAATTGATTGACAAAGCTGGAGATTTTGTTAGTGATGACATCTGGTTTCGTGTGGTGCAATTTGTCACAAACAATGAGGACCTACAGCCTTATGCTGCAGCAAAAGCTCGAGAGTATCTTGACAAACCAGCCATACATGAGACAATGGTTAAGGTCAGTGCGTATATCATTGGAGAATTTGGACACCTTCTGGCTAGAAGACCTGGGTGTAGTCCGAAGGAATTATTTGGCATAATACATGAGAAACTTCCTTCTATATCGATTCCATCTATTCCTATTCTTCTTTCAACGTATGCGAAAATTCTTATGCACACTCAACCACCAGACCCAGAACTTCAGAATCAGATATGGGCAATATTTAACAAATACGGGAGTTGCATTGATGTTGAGATACAGCAAAGAGCTGTTGAATATCTTACATTGAGCAGTAAAGGTGAAGCTCTGATGGACATATTAGCTGAAATGCCTAAATTCCCTGAACGACAGTCTGCATTGATAAAAAAAGCTGAAGATACTGAACTTGATTCTGCGGAACAAAGTGCCATAAAATTGCGAGCCCAGCAGCAAGCTCAAACATCAAATGCGTTGGTTGTAACTGACCCACATACTGCAAATGGAACTCTGCCTGTAAACCAACTTGGTCTTGTGAAGATGCCCAGCATGAGCAGTACTGTGGACCATGATTCAGCAGGTCAACAATTATCCCTGGAAAATGGGACATCAAGTAATGTAGATTCTGAACCTCCTACTGCAGATCTCCTTAGTGATATCTTGGGTCCATTAGCTATTGAAGGTCCTCCCAGTAGCAGTGTCCAGTCTCAGCCAAACACAAATTCAGGATTGGAAGGTACTGCAATTGAAGCCACGGCCATAGTACCTGCAGGAGAGCAGGCAAACTCTGTGCAGCCAATTGGAAATATTGCAGAAAGATTTCATGCTTTGTGCTTGAAGGATAGTGGTGTTCTTTATGAGGATCCTTATATTCAGATTGGCATTAAAGCAGAATGGAGAGCACATCATGGGCGTCTTGTCCTTTTCTTAGGGAATAAGAATACTTCTCCTCTTGTCTCTGTTCAAGCCATAATATTGCCTCCATCTCATTTGAAGATGGAGCTCTCACTAGTGCCAGAAACTATACCTCCCCGAGCACAGGTGCAATGCCCACTTGAAGTCATTAATCTTCACCCGAGCAGGGATGTGGCTGTTCTTGACTTCTCCTACAAGTTTGGTAACGATATGGTCAATGTCAAACTTCGCCTTCCAGCTGTCCTAAATAAGTTTCTTCAGCCTCTCACTGTATCTTCTGAAGAGTTTTTCCCTCAATGGAGATCACTTTCTGGGCCACCTTTGAAGCTTCAAGAAGTGGTTAGAGGTGTCAAACCACTTCCGCTTCTTGAAATGGCGAATTTATTCAATAGTTACCGTTTGACAATTTGCCCAGGGCTTGATCCCAATCCAAACAATCTTGTTGCGAGTACAACATTCTATTCAGAAAGTACACGGGCAATGCTCTGTTTAATGAGAATTGAAACGGACCCAGCAGACAGAACCCAGCTACGGATGACAGTTGGTTCAGGGGATCCTACCCTAACGTTTGAGTTGAAGGAGTTCATCAAGGAACTGTTAGTCAGTTTGCCCCCAGCAAACCGCGCACCAATGCAAGCATCTCCAATGCCTCCGGTGGCTCAACCTGTTAGCATGCCTCCAGCGCCAGCGCCTGTAGCGTCAAACGACCCTGGAGCGATGCTGGCTGCTCTTCTATGA 3078 0.4279 MALSGMRGLSVFISDIRNCQNKEQERLRVDKELGNIRTRFKNDKVLTPYEKKKYVWKMLYIYMLGYDVEFGHMEAVSLISAPKYPEKQVGYIVTSSLLNENHDFLRLAINTVRNDIIGRNETFQCLALTMVGNIGGREFAESLAPDVQKLLISSSCRPLVRKKAALCLLRLYRKNPDVVNVDGWADRMAQLMDERDLGVLTSSMSLLVALVSNNHEAYWSCLPKCVKVLERLARNQDVPQEYTYYGIPSPWLQVKTMRALQYFPTIEDPNTRRSLFEVLQRILMGTDVVKNVNKNNASHAVLFEALALVMHLDAEKEMMSQCVALLGKFIAVREPNIRYLGLENMTRMLMVTDVQDIIKRHQAQIITSLKDPDISIRRRALDLLYGMCDVSNAKDIVEELLQYLSTAEFAMREELSLKAAILAEKFAPDLSWYVDVILQLIDKAGDFVSDDIWFRVVQFVTNNEDLQPYAAAKAREYLDKPAIHETMVKVSAYIIGEFGHLLARRPGCSPKELFGIIHEKLPSISIPSIPILLSTYAKILMHTQPPDPELQNQIWAIFNKYGSCIDVEIQQRAVEYLTLSSKGEALMDILAEMPKFPERQSALIKKAEDTELDSAEQSAIKLRAQQQAQTSNALVVTDPHTANGTLPVNQLGLVKMPSMSSTVDHDSAGQQLSLENGTSSNVDSEPPTADLLSDILGPLAIEGPPSSSVQSQPNTNSGLEGTAIEATAIVPAGEQANSVQPIGNIAERFHALCLKDSGVLYEDPYIQIGIKAEWRAHHGRLVLFLGNKNTSPLVSVQAIILPPSHLKMELSLVPETIPPRAQVQCPLEVINLHPSRDVAVLDFSYKFGNDMVNVKLRLPAVLNKFLQPLTVSSEEFFPQWRSLSGPPLKLQEVVRGVKPLPLLEMANLFNSYRLTICPGLDPNPNNLVASTTFYSESTRAMLCLMRIETDPADRTQLRMTVGSGDPTLTFELKEFIKELLVSLPPANRAPMQASPMPPVAQPVSMPPAPAPVASNDPGAMLAALL 1025
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele12g0212 1025 Pfam Adaptin N terminal region 28 582 IPR002553 GO:0006886|GO:0016192|GO:0030117
Lele12g0212 1025 SUPERFAMILY Clathrin adaptor appendage domain 737 864 IPR013041 -
Lele12g0212 1025 PIRSF AP2_alpha 1 982 IPR017104 GO:0015031|GO:0030122|GO:0035615|GO:0072583
Lele12g0212 1025 Gene3D - 2 611 IPR011989 -
Lele12g0212 1025 MobiDBLite consensus disorder prediction 659 687 - -
Lele12g0212 1025 Coils Coil 605 625 - -
Lele12g0212 1025 MobiDBLite consensus disorder prediction 659 689 - -
Lele12g0212 1025 SMART alpha_adaptinc2 750 859 IPR008152 GO:0006886|GO:0016192
Lele12g0212 1025 SUPERFAMILY ARM repeat 5 585 IPR016024 -
Lele12g0212 1025 FunFam AP-2 complex subunit alpha 1 611 - -
Lele12g0212 1025 Pfam Alpha adaptin AP2, C-terminal domain 865 973 IPR003164 GO:0006886|GO:0016192|GO:0030131
Lele12g0212 1025 Pfam Adaptin C-terminal domain 757 853 IPR008152 GO:0006886|GO:0016192
Lele12g0212 1025 Gene3D - 866 979 IPR012295 -
Lele12g0212 1025 PANTHER ADAPTIN, ALPHA/GAMMA/EPSILON 11 957 - -
Lele12g0212 1025 Gene3D - 737 865 - -
Lele12g0212 1025 SUPERFAMILY Subdomain of clathrin and coatomer appendage domain 865 980 IPR009028 GO:0006886|GO:0016192|GO:0030117
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele12g0212 Lele-ChrLele12 1747038 1759260 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele12g0212 12 1747038 1759260 Lele29g0314 29 1897110 1900429 CCT
Lele12g0212 12 1747038 1759260 Lele30g1094 30 14072131 14075434 CCT
Lele12g0212 12 1747038 1759260 Lele31g1232 31 18625617 18628947 CCT
Lele12g0212 12 1747038 1759260 Lele32g0299 32 1867474 1870803 CCT
Lele09g1107 09 20244940 20256691 Lele12g0212 12 1747038 1759260 hybridization
Lele10g1075 10 22104531 22116269 Lele12g0212 12 1747038 1759260 hybridization