Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele12g0207 ATGGCGGAGGACCGCAACGGCGATAAGGATGAAAACAGTGATTACAGTTCAGAGGATGAAGGAACTGAGGATTACAGGCGAGGAGGTTACCATGCGGTTCGAATTGGGGATACTTTCAATAATGGGTGTTACGTGGTGCGGGCCAAGCTTGGTTGGGGTCATTTTTCTACTGTCTGGCTTGCTTGGGACGTCCAGAGATCGCGTTATGTGGCCTTAAAAATTCAAAAGAGTGCTCAGCACTATACTGAAGCTGCCATGGATGAAATAAAGATTCTTAAACAGATTGCAGAAGGGGACCCAGATGACAAGAAATGTGTTGTAAAGCTTTTGGATCACTTCAAGCATTCTGGTCCAAATGGTCAGCATGTATGTATGGTATTTGAATTCCTGGGTGACAATCTTCTGACACTTATCAAGTATAGTGATTATAGAGGGGTTCCTCTCCCCATGGTTAAAGAAATTTGCTACCATATTTTGGTGGGCTTGGATTACTTGCACCGAGAGCTTTCCATAATACATACAGATTTGAAGCCAGAGAATGTCTTGCTTCTGTCTATGATAGATCCGTCTAAGGATCACAGGAAGTCAGGTGCCGCACGCATCCTTCCTAGCACCAAGGATAATTTTGTATCCAATAATGAGGTCACAAAAGATAATGCAAGTTCAAATGGAAATCTTACCAAAAACCAAAAAGAGAAAATGCATAGAATGGCTAAAGTTGAGGATGAAATTATTGAGGAGGCTGAGGGTTCTAAAGATCATGATCAAGAAGATTCTAGGAATCATCTAAAATCAAATGCTGGATATGTTGAAGATAAACCCAGTAGTTCAGTGAGTAAAGATGAACCAACAAAGGTAGTCGAGACTAAGGATGTTCCGCAAGGAAGTCAGACTCAGAGGAAAAGTAGCCGTTCCATGAGAAGAAAGCTGCTTGCAGCTGTTGACCTAAAGTGCAAGCTGGTTGATTTCGGAAATGCTTGTTGGACTTATAAACAATTCACAAACGATATTCAAACAAGGCAGTATAGGTGTCCTGAGGTTATTCTTGGATCTAAATACTCAACTCCAGCGGATTTGTGGTCTTTTGCTTGCATTTGCTTTGAGCTGGCCACTGGTGATGTTCTTTTTGACCCTCACAGTGGTGACAACTATGATAGGGATGAGGATCACCTGGCATTGATGATGGAACTTCTTGGAATGATGCCTCGCAAGATCGCACTAGGTGGCCGCTATTCCCGGGAATTTTTCAATAGATATGGTGATCTAAGGCACATTCGTCGGTTGCGGTTCTGGCCTCTTAATAAGGTGCTTGTGGAGAAGTATAATTTCAGTGAGCAAGACGCAAAAGACATGGCAAACTTCCTCGTTCCCATACTTGATTTTGTCCCTGAAAATAGGCCAACAGCTGCTCAGTGTCTTAGTCATACCTGGTTCAGTGCTGGTCCTCGGATTCTTCAGCCCTCTACAACTACTGAGCAACCTGAGGCCATTGAGGGGGGAGTGTCTGAAGAAACCAAGCGGGATAAAGTTGAGCAGGAAGCTGTGGAAGTTGGTGTGGGCAATATAGCAATTGATGGAACCCCAAAGCCCCTCAAAAAGTCCCAATCTGTCAAGTTATAA 1620 0.4352 MAEDRNGDKDENSDYSSEDEGTEDYRRGGYHAVRIGDTFNNGCYVVRAKLGWGHFSTVWLAWDVQRSRYVALKIQKSAQHYTEAAMDEIKILKQIAEGDPDDKKCVVKLLDHFKHSGPNGQHVCMVFEFLGDNLLTLIKYSDYRGVPLPMVKEICYHILVGLDYLHRELSIIHTDLKPENVLLLSMIDPSKDHRKSGAARILPSTKDNFVSNNEVTKDNASSNGNLTKNQKEKMHRMAKVEDEIIEEAEGSKDHDQEDSRNHLKSNAGYVEDKPSSSVSKDEPTKVVETKDVPQGSQTQRKSSRSMRRKLLAAVDLKCKLVDFGNACWTYKQFTNDIQTRQYRCPEVILGSKYSTPADLWSFACICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIALGGRYSREFFNRYGDLRHIRRLRFWPLNKVLVEKYNFSEQDAKDMANFLVPILDFVPENRPTAAQCLSHTWFSAGPRILQPSTTTEQPEAIEGGVSEETKRDKVEQEAVEVGVGNIAIDGTPKPLKKSQSVKL 539
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele12g0207 539 SMART serkin_6 44 478 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele12g0207 539 CDD STKc_SRPK 33 478 - -
Lele12g0207 539 MobiDBLite consensus disorder prediction 194 236 - -
Lele12g0207 539 ProSitePatterns Serine/Threonine protein kinases active-site signature. 171 183 IPR008271 GO:0004672|GO:0006468
Lele12g0207 539 ProSitePatterns Protein kinases ATP-binding region signature. 50 73 IPR017441 GO:0005524
Lele12g0207 539 MobiDBLite consensus disorder prediction 488 509 - -
Lele12g0207 539 SUPERFAMILY Protein kinase-like (PK-like) 39 487 IPR011009 -
Lele12g0207 539 Gene3D Phosphorylase Kinase; domain 1 20 126 - -
Lele12g0207 539 MobiDBLite consensus disorder prediction 1 23 - -
Lele12g0207 539 MobiDBLite consensus disorder prediction 248 306 - -
Lele12g0207 539 FunFam CMGC/SRPK protein kinase 30 129 - -
Lele12g0207 539 MobiDBLite consensus disorder prediction 248 267 - -
Lele12g0207 539 Gene3D Transferase(Phosphotransferase) domain 1 127 479 - -
Lele12g0207 539 PANTHER PROTEIN KINASE DOMAIN-CONTAINING PROTEIN-RELATED 11 498 - -
Lele12g0207 539 MobiDBLite consensus disorder prediction 205 228 - -
Lele12g0207 539 ProSiteProfiles Protein kinase domain profile. 44 478 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele12g0207 539 Pfam Protein kinase domain 44 184 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele12g0207 539 Pfam Protein kinase domain 315 478 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele12g0207 539 FunFam Serine/threonine-protein kinase SRPK-like protein 308 478 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele12g0207 Lele-ChrLele12 1676291 1678724 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele12g0207 1 529 EF-hand Containing Proteins AT5G22840 67.416 0.0 735
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_SRPK Lele12g0207 Pkinase 1.5e-19 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele09g1115 09 20299802 20302366 Lele12g0207 12 1676291 1678724 hybridization
Lele10g1081 10 22182943 22185369 Lele12g0207 12 1676291 1678724 hybridization