Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele12g0199 ATGCTCATGACTAATCGCAAACTTCCCGTTGAATTGAAGACTAGGAAATTTCGTCATTAAACTTCACTGGATAAATTAGAAATGGCTATTGCTGGACTACATAATCTGTCTGTGCTTGACTCTTCTTTTCTTAGGGATTCCCATTCTCAATCACCTATGAGGCGAGGAGATGGAGGGAGTGGAAGCACCCGATCTTCTTCAATCTTGCAAATGTGGCGAGAGATTGAGGATGAGCATGTGGTGGGTCAAGTCCGAGGAAGACCTGGTGATGGATTACTTCAGCAAAGGAGTGACGAGTTCATTGCTGATCTCTCACAGGCAAGTATGCCAGGTAGCCATGAGATAGGAGAGAGTCTTGTCGTAGAAGATTCAATTTTGGGCGAGAATGATTGTCAAACATGGTCACAGTCACAGAGTCAGCATGAATCTCCTGATGAGCAGGAGGAATTAAACAATTCTACTTGTGATAATTCTTCTGATCTTGGACAAGTTGAAAGGGAAAGGGTGAGGCAAATTTTCAGGGAATGGATGAAGAGTGGTGCTGGGGATCAAGCCACAAATAGTCCCCAAGGTAATAGCAGTTCAAGATCAGAATGGCTTGGTGAAACTGAGCAGGAGAGGGTGAGAATCATAAGGGAGTTGGTACAATCAAGTAGCCAGCAGAGAGTTATTTCTTCTGGGGACAACAGGGAAGAACAATCAGCTGAATTTGGTACCCAAATAGAACGAGTTCGTGATGGATTTGTTGTTAATCAGAGTGAGGGTCAGACTGAGCATTTGCGAAGGGGTATTCGTAAATTATGTGGCAGACAGGTTCTGCTTGATATGCTTAAGAAGGCCCAGGGGGAAAGACAAAGAGAAGTTCAGGAATTATTGGACCATAGAGCTGTATCTCAGTTCCCCCACCGCAACCGCATTCAGGCATTGCTCAGGGGCAGGTTCTTGAGAAATGACAGATCAATTGATGTTAACCGGTCCACTTCCATAGCTGAAAGTGAATTAGGCTTACTGAGGCAAAAACAGACTGTATCAGGTCTAAGGGAAGGGTTTTTCTCTGGGAAGGACAATTCTGGTGGCTGTCAAGAGGCTGTGGAAAATTGGTTGGGTGGACCTTCTGATCATGAAGTTGCTCCAGTTGGTAGAATTCATGGCTTTTACTTTCCAGATGATGACAATGTGAACAGTGTGGAACTCAGGGAACTGCTAAATAGGAGAAGTGTTTCTAACCTCCTTCGCAGCAGTTTTCGTGAAAGTCTTGACCAGTTGATACAATCATATGTTGAAAGGCAAGGTCATGCTCACGTTGAGTGGGAGCTGCAAGAAACAACCCCTTCTTCTGCCTCAGTTGAACAGGACCTGGAGCAGCCACGTAGGGGTCAGATTGTTGGTCAGGAGGATACTATCAACAGTCCACTTGACCAACCCTCATCGCCAACACCTCCTCAACCTCTCTGGGAACGACATTCACGTCATGACAATTGGTCACGAGCTGACATGAATAATCAGCGTCTAGGAATTGGGCATTCATTTTCTTTGGAGTGGGAGATTATCAATGACTTGAGAATTGACATGGCTAGGCTACAGCAAAGAATGAATAATATGCAGAGAATGCTGGAGGCCTGTATGGATATGCAGCTTGAGTTGCAGCGCTCAATAAGACAGGAGGTTTCTGCAGCCCTAAATCGCTCAGCTGGTTCATCAGATATGGTTGACCATGATTCACCTGATGACAAGTCTAAATGGGAATGTGTGAGAAAAGGACTATGCTGTGTTTGCTGTGAGAGCAATATTGATTCTTTGTTGTACAGATGCGGGCACATGTGCACATGTTCAAAATGTGCCAATGAGTTGTTCCAAAGTAGGAGAAAGTGTCCAATGTGTCAAGCGCCTGTTGTGGAGAGTGCACAGACGGAACACACTATAGCATTTTCCCCCCATGACTCAAATGAATGA 1953 0.4496 MLMTNRKLPVELKTRKFRHXTSLDKLEMAIAGLHNLSVLDSSFLRDSHSQSPMRRGDGGSGSTRSSSILQMWREIEDEHVVGQVRGRPGDGLLQQRSDEFIADLSQASMPGSHEIGESLVVEDSILGENDCQTWSQSQSQHESPDEQEELNNSTCDNSSDLGQVERERVRQIFREWMKSGAGDQATNSPQGNSSSRSEWLGETEQERVRIIRELVQSSSQQRVISSGDNREEQSAEFGTQIERVRDGFVVNQSEGQTEHLRRGIRKLCGRQVLLDMLKKAQGERQREVQELLDHRAVSQFPHRNRIQALLRGRFLRNDRSIDVNRSTSIAESELGLLRQKQTVSGLREGFFSGKDNSGGCQEAVENWLGGPSDHEVAPVGRIHGFYFPDDDNVNSVELRELLNRRSVSNLLRSSFRESLDQLIQSYVERQGHAHVEWELQETTPSSASVEQDLEQPRRGQIVGQEDTINSPLDQPSSPTPPQPLWERHSRHDNWSRADMNNQRLGIGHSFSLEWEIINDLRIDMARLQQRMNNMQRMLEACMDMQLELQRSIRQEVSAALNRSAGSSDMVDHDSPDDKSKWECVRKGLCCVCCESNIDSLLYRCGHMCTCSKCANELFQSRRKCPMCQAPVVESAQTEHTIAFSPHDSNE 650
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele12g0199 650 MobiDBLite consensus disorder prediction 440 493 - -
Lele12g0199 650 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 358 634 - -
Lele12g0199 650 MobiDBLite consensus disorder prediction 130 201 - -
Lele12g0199 650 ProSiteProfiles Zinc finger RING-type profile. 589 628 IPR001841 -
Lele12g0199 650 MobiDBLite consensus disorder prediction 46 65 - -
Lele12g0199 650 CDD mRING-HC-C3HC5_NEU1 589 627 - -
Lele12g0199 650 Coils Coil 517 544 - -
Lele12g0199 650 MobiDBLite consensus disorder prediction 181 199 - -
Lele12g0199 650 Pfam Zinc finger, C3HC4 type (RING finger) 586 631 - -
Lele12g0199 650 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 567 637 IPR013083 -
Lele12g0199 650 SUPERFAMILY RING/U-box 588 634 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele12g0199 Lele-ChrLele12 1527527 1532544 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele31g1251 31 18763435 18767060 Lele12g0199 12 1527527 1532544 CCT
Lele30g1115 30 14206287 14208031 Lele12g0199 12 1527527 1532544 CCT
Lele09g1125 09 20400650 20408186 Lele12g0199 12 1527527 1532544 hybridization
Lele10g1094 10 22351578 22355246 Lele12g0199 12 1527527 1532544 hybridization