Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele12g0190 ATGATTTCAAGAGCCATCACAGCGTCTGGTTTCTCAAATCTCTCTCATCAAGGCCTGCACAATATGTTTCCTCCTGCTGCTGATGATAATCTGGTTGAATCAGCTCCTTCTCAGTCAAGCTCGCTCATGCTCAATCTCTCTGTCCTCAAAGACAAGCTTACTCATTTGCAGAATCTGGCAGGTATTCTTCTCTCCTCGGATCAGATCCTACCAGACTCAACATGTACAACGTTAGCCAGTATGAATTCTATAATCCAGGAGTTCATAGTCACTGCCTCTTCCATGACGCTCACGTGCCAACACATGGTCCTTAATTTCTCTCCACCACCGCCGCCGCCGCCGCCGCCACCAGGTACTCATCATTGCACTGAATCCAACTTTGGCAATTATACAACTAGTGTTACAAATAACATAGCTCAACACAGAGGGCCGCAAGGTATCTTCTCTAGTCCTAATGATCAAAGCTTGGGCTGGTTTGGTGGTGAAAGCTATGATAATAATCTCAAGGATGATGATCCGAGTGTTGGAATTATTGAAACGAAGAGAGAATTGTGTCAAGGAGATGAAACCAATGAATCAAAGAACGAAGACATGATTATTGAATTGGATGCTTCTGATTTGTTGGCAAAGTACACGCATTACTGTCAGATTTGTGGGAAAGGGTTTAAACGAGATGCGAATTTGAGGATGCATATGAGAGCTCATGGGGATGAGTACAAGACAAGTGCGGCTTTGAGCAATCCGATGAAGAAGAATAGAGATAAAGAATGTTCGATGAGCAGCACTACGTTTAGGCCTAAGAAATATTCATGTCCACAAGAAGGATGTAGGTGGAATCAGAAACATGCAAAGTTTCAACCGTTGAAGTCAATGATATGTGTGAAGAATCACTACAAGAGAAGTCATTGTCCGAAGATGTACGTGTGTAAGAGGTGCAATTTGAAGCAGTTCTCGGTGCTGTCTGATCTGAGAACACATGAGAAGCACTGTGGGGATCTCAAATGGCAGTGTTCGTGTGGTACAACGTTTTCAAGGAAAGACAAGCTCATGGGCCATGTTGCTTTGTTCGTTGGCCATGCTCCAGCTGTCGGCGGGGGCTTGTCGTATTCTAGAAAATTGCAACTGCAGGAAGATGGTAGTTCATCAAGATGA 1152 0.441 MISRAITASGFSNLSHQGLHNMFPPAADDNLVESAPSQSSSLMLNLSVLKDKLTHLQNLAGILLSSDQILPDSTCTTLASMNSIIQEFIVTASSMTLTCQHMVLNFSPPPPPPPPPPGTHHCTESNFGNYTTSVTNNIAQHRGPQGIFSSPNDQSLGWFGGESYDNNLKDDDPSVGIIETKRELCQGDETNESKNEDMIIELDASDLLAKYTHYCQICGKGFKRDANLRMHMRAHGDEYKTSAALSNPMKKNRDKECSMSSTTFRPKKYSCPQEGCRWNQKHAKFQPLKSMICVKNHYKRSHCPKMYVCKRCNLKQFSVLSDLRTHEKHCGDLKWQCSCGTTFSRKDKLMGHVALFVGHAPAVGGGLSYSRKLQLQEDGSSSR 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele12g0190 383 SMART c2h2final6 307 329 IPR013087 -
Lele12g0190 383 SMART c2h2final6 213 235 IPR013087 -
Lele12g0190 383 SMART c2h2final6 269 302 IPR013087 -
Lele12g0190 383 Pfam Zinc finger, C2H2 type 213 235 IPR013087 -
Lele12g0190 383 SUPERFAMILY Formin homology 2 domain (FH2 domain) 108 280 - -
Lele12g0190 383 SUPERFAMILY beta-beta-alpha zinc fingers 211 238 IPR036236 -
Lele12g0190 383 FunFam Zinc finger protein 574 212 237 - -
Lele12g0190 383 ProSitePatterns Zinc finger C2H2 type domain signature. 215 235 IPR013087 -
Lele12g0190 383 Gene3D Classic Zinc Finger 305 355 - -
Lele12g0190 383 ProSiteProfiles Zinc finger C2H2 type domain profile. 213 240 IPR013087 -
Lele12g0190 383 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 34 363 IPR044300 GO:0010044|GO:0010447
Lele12g0190 383 Gene3D Classic Zinc Finger 189 273 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele12g0190 Lele-ChrLele12 1487196 1488347 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele12g0190 39 364 C2H2 Transcription Factor Family AT5G22890 50.000 4.24e-102 305
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lele12g0190 zf-C2H2 9.9e-05 CL0361
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele12g0190 12 1487196 1488347 Lele29g0299 29 1766924 1768693 CCT
Lele12g0190 12 1487196 1488347 Lele30g1117 30 14221899 14223667 CCT
Lele12g0190 12 1487196 1488347 Lele31g1253 31 18774527 18776291 CCT
Lele12g0190 12 1487196 1488347 Lele32g0277 32 1723107 1724876 CCT
Lele09g1130 09 20443037 20444239 Lele12g0190 12 1487196 1488347 hybridization
Lele10g1102 10 22406215 22407351 Lele12g0190 12 1487196 1488347 hybridization