Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele12g0188 ATGGAAGGCCCGGAGGAATTAGAGTTTCTGGGGCTGTCGGATAATCACGCCACCGCCGTCACGCACATCGCCAAAGGCAAGCGTACCAAGAGGAACAGGCCCCTCTCGCCTTGTGCTGTCGTCGCCGCCACCATGACCTCTAGCTCATCGAGCGTCTCCGGGGAACACCTCAGCGCCAGTGGAGATTACGGTTCCGTTTCGTCCACCACGACCACTCATAATAATTATGACGAGAGCACTGAGGAAGAGGAAGACATGGCCAACTGTTTAATTCTCTTGGCTCAGAGTGGGGATTCCCATAATCTCAAGCACCGACCTCCTCAATCTCAAGCCACCAGAACAGAATTACCGGGAGGCAGCCGGAGATTAGCCGAGATACCCACCGTCACCGCAGCCGGTGCCGCCAAAGTTGGTTTGTTTATGTATGAGTGCAAAACGTGTAACCGAAGTTTTCCTTCTTTTCAAGCGTTGGGTGGGCACAGGGCCAGCCACAAAAAGCCTAAGCTGACGTTAGAGGAGAAGAAACTGCCGCCAAAACCACTTATCAAAAGTTATGAGATTGAAGAAGCTCCGATTAAAACCAGCCCTCAAATTTCTCTTCAATTAGGAAATAACATAAATGGGGTTGTGTCCATCAACAAGGCCAAGATTCACGAGTGTTCAATATGCGGGTCGGAATTCACGTCAGGGCAGGCATTGGGAGGCCACATGAAGAGGCACAGGGCATCCACATCAACCGTGGGTGCGGCACCTCAGGCGAGTTATGACGGAGTCGCCGGCAACACTAGGACGGTGGTGGCTGAGGTGGAAGTGAAGCCAAAATTTCTAGCTTTGGATCTAAACCTGCCGGCGCCGGAAGAGGATCATCATTATCAGCGGGATTCCAAGTTTGAGTTGACGACAAAAGAGAAACCATTGGTGCTGTCTGCTGCGTCATTGGTTGGCTGCCATTATTAG 957 0.5183 MEGPEELEFLGLSDNHATAVTHIAKGKRTKRNRPLSPCAVVAATMTSSSSSVSGEHLSASGDYGSVSSTTTTHNNYDESTEEEEDMANCLILLAQSGDSHNLKHRPPQSQATRTELPGGSRRLAEIPTVTAAGAAKVGLFMYECKTCNRSFPSFQALGGHRASHKKPKLTLEEKKLPPKPLIKSYEIEEAPIKTSPQISLQLGNNINGVVSINKAKIHECSICGSEFTSGQALGGHMKRHRASTSTVGAAPQASYDGVAGNTRTVVAEVEVKPKFLALDLNLPAPEEDHHYQRDSKFELTTKEKPLVLSAASLVGCHY 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele12g0188 318 MobiDBLite consensus disorder prediction 99 118 - -
Lele12g0188 318 Gene3D Classic Zinc Finger 139 240 - -
Lele12g0188 318 ProSiteProfiles Zinc finger C2H2 type domain profile. 142 169 IPR013087 -
Lele12g0188 318 MobiDBLite consensus disorder prediction 101 116 - -
Lele12g0188 318 PANTHER ZINC FINGER PROTEIN ZAT5 67 305 - -
Lele12g0188 318 SUPERFAMILY beta-beta-alpha zinc fingers 141 240 IPR036236 -
Lele12g0188 318 MobiDBLite consensus disorder prediction 49 75 - -
Lele12g0188 318 ProSitePatterns Zinc finger C2H2 type domain signature. 220 240 IPR013087 -
Lele12g0188 318 ProSitePatterns Zinc finger C2H2 type domain signature. 144 164 IPR013087 -
Lele12g0188 318 Pfam C2H2-type zinc finger 218 242 - -
Lele12g0188 318 Pfam C2H2-type zinc finger 142 167 - -
Lele12g0188 318 ProSiteProfiles Zinc finger C2H2 type domain profile. 218 245 IPR013087 -
Lele12g0188 318 SMART c2h2final6 218 240 IPR013087 -
Lele12g0188 318 SMART c2h2final6 142 164 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele12g0188 Lele-ChrLele12 1469896 1470852 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele12g0188 21 318 C2H2 Transcription Factor Family AT2G28200 42.902 1.13e-53 175
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lele12g0188 zf-C2H2_6 1.2e-11 CL0361
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele09g1132 09 20456410 20457375 Lele12g0188 12 1469896 1470852 hybridization
Lele10g1104 10 22421241 22422239 Lele12g0188 12 1469896 1470852 hybridization