Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele12g0185 ATGCTCAAAATGGATGCTCATCATCACCAAGACCCTCTGATGCAAATGAACGACTTCCAGCTTCATGACTTTATCGACGACACCAATTTCGATCAGTTTATCAATTTGCTCCGTGGCGGCGAGAACGAGCACTCATTCTGTAATTTTGATTCTGACCTTATCGTCAATGGCTGCTTAGCTGTTGATAATAACCAGTTTCTTCCATTACCTACTGCAAACCCGTTATTTGAGTCTAATAATGCTGCTGTAAATGCTTATGATCCAAGCTCTACGCTCAGTTCCTTCTCATGTTTTGATGGAGAAGTGGAGGGAGGAAGAGGAGGAGAAGAAGAGAATGATTCTTCTGCAACAACAATCACCACCACCACTGAAAATAAATCTTCTGCTAATGCCAAACAGAAGTCCAAAACTGATCGCTCCAAGACTCTGATTTCTGAAAGGAGGAGAAGAGGCCGAATGAAGGAGAAGCTTTATGCGTTGCGTTCTTTGGTTCCCAACATAACTAAGATGGATAAGGCCTCTATCGTGGGCGATGCTGTAGCATATGTGCAGGAGCTGCAAGAGACAGCTAAGAAGCTGAAGGCTGAGGTTAAAGGGCTTGAAGCATCTCTGGTAGCGTCAGAAAATGATAAAAGATCAGCTAAAATTCCCATGAAGGTTCAAAACAACAACCACATAAACTATCCAATCTGCAAGAAGATCATGCAGATGGATATGTTTCAAGTGGAGGAAAGAGGGTTTTACGTGAAATTGGTTTGTAAAAAAGGAGAAGGAGTGGCTGTCTCCTTGTACAGAGCTCTTGAGTCCCTAGCAGGCTTCGATGTTCAGAATTCAAACTTGGCCACAGTTTCTGACAGCTTTCTATTAACATTTACATTGAATGTGAAAGGTTGCGAGCCAGAAATTAACCAGCAAAATCTGAAACTGTGGGTGGCGAGCGCTCTTCTAAACCAAGGCTTTGAATTTATTCCAACTTTCCATGCTTGA 987 0.4255 MLKMDAHHHQDPLMQMNDFQLHDFIDDTNFDQFINLLRGGENEHSFCNFDSDLIVNGCLAVDNNQFLPLPTANPLFESNNAAVNAYDPSSTLSSFSCFDGEVEGGRGGEEENDSSATTITTTTENKSSANAKQKSKTDRSKTLISERRRRGRMKEKLYALRSLVPNITKMDKASIVGDAVAYVQELQETAKKLKAEVKGLEASLVASENDKRSAKIPMKVQNNNHINYPICKKIMQMDMFQVEERGFYVKLVCKKGEGVAVSLYRALESLAGFDVQNSNLATVSDSFLLTFTLNVKGCEPEINQQNLKLWVASALLNQGFEFIPTFHA 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele12g0185 328 MobiDBLite consensus disorder prediction 111 130 - -
Lele12g0185 328 FunFam Basic helix-loop-helix (BHLH) DNA-binding superfamily protein 133 203 - -
Lele12g0185 328 SMART finulus 143 192 IPR011598 GO:0046983
Lele12g0185 328 Pfam Helix-loop-helix DNA-binding domain 144 187 IPR011598 GO:0046983
Lele12g0185 328 Gene3D - 128 203 IPR036638 GO:0046983
Lele12g0185 328 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 137 186 IPR011598 GO:0046983
Lele12g0185 328 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 137 203 IPR036638 GO:0046983
Lele12g0185 328 MobiDBLite consensus disorder prediction 131 148 - -
Lele12g0185 328 MobiDBLite consensus disorder prediction 102 148 - -
Lele12g0185 328 Coils Coil 183 210 - -
Lele12g0185 328 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 17 318 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele12g0185 Lele-ChrLele12 1445416 1447070 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele12g0185 13 320 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G28160 52.351 8.42e-101 297
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lele12g0185 HLH 1.4e-09 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele29g0294 29 1739717 1742903 Lele12g0185 12 1445416 1447070 CCT
Lele30g1121 30 14245188 14248647 Lele12g0185 12 1445416 1447070 CCT
Lele09g1135 09 20486156 20487804 Lele12g0185 12 1445416 1447070 hybridization
Lele10g1107 10 22453780 22455430 Lele12g0185 12 1445416 1447070 hybridization