Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele12g0184 ATGTCTTCGCGACGGTCTGCCTTCGATGCTCTCATGTCAGGGGCTCGTGCCGCCGCCAAGAAGAAGCCCCAATCATCGTCTCCCCAGAAACGAAAAACCGCGGATTCTAATTCGACCCAAAACCCTAAACTCCTCAAGAGCACGGAAAGTACTGATGAGTCTTCGGAACCCGGTAACGATACTAAATGCGTTGACATTAAAGATTCCGAGAAGGCACAAGAGCTGAAAAAAGAAGACTTGAGCAATGGTGGGCTGACGGAGTCAGAGGGTGCACTAGCGGCGAAGAGAATGCGCGTTGTAGGTTCCCAGGAAAAGATTACTGAAATGAAGAAAAAAGTTTCTCTTATGAAGAAGAAGCCTTCAGATTTTGACCCTAGTTTAATATCTTGTTGTGACAAGGGTGAACCTGTGCCCTTTCTGTTTCTCAGTTTGGCATTTGATATGATTAATGTTGAAAAAGGACGGATTGTGATTACAGATATAGTGTGCAATATGCTGAGGACTATCATGAACACTACACCTGAGGATCTGGTAGCTGTTGTTTATCTTTCCACAAATAAGATTGCTCCGCCACATGAAGGGTTGGAATTGGGAATAGGAGATGCTTCAATTATCAAGGCGCTTGCAGAGGCATGTGGAAGAACTGAGACGCAGATAAGAAATCAGTATAAGTTATTGTGGAACAAGAGCTTGAAATCTAATTATGAGCTTATCCTCTGGAATCTGGTTGCAATCATGGTGTATTTATTGAAATATTGTGGTGGGCTTTGTTCTCAATATTATTATGATTTGGATCATCATCATTATTTGCAGTCAAAGTTGCGGATTGGTTATGGTGAGCAAACTCTCTTAGCTGCATTGGGCCAGGCTGCAGTATACACAGAAGGACATTCTGTAACACCTCCTGAAATTCAGTCCCCTTTAGAAGAGGCTGCAAAGATTGTTAAACAAGTGTATTCTGTTCTTCCTGTGTATGACAAAATAATTCTGGCATTGGTTAGTGGTGGTGTATGGAAACTTCCAGAGATGTGTAACTTCACTCCTGGTGTTCCAGTTGGACCTATGTTGTCTAAAGCAACTAAGGGTGTATCTGAAGTTCTAAATAAATTCCAGGATGCAGAGTTTACTTGTGAATACAAATATGATGGGGAGCGTGCTCAGATACATTACATGGATAATGGATCAGTTGAGATTTACAGTAGAAATGCTGAACGGAACACTGGAAAGTTTCCTGATGTTGTTGCTGCTATTTCAAGTACTCGAGCTCGGAAAAATGTTTCTCTGAGTGATATAAAAGTGGATGTAAGCATATTTGCCTTTGATATCTTGTATCTTAATGGCAAGCCACTACTTCAGGAAACCCTAAAAATCCGGAGAGAGCACCTCTATGCCTCTTTTGAGGAAGAACCTGGATTTCTTCAGTTTGCAACAACAATAACATCAAACGATGTTGAGGAAATACATAAGTTTCTCGATGCAGCAGTTGATGCTAGTTGTGAGGGTTTAATTATCAAAACTTTATATGAAGACGCTACATATGAACCTTCCAAGCGGTCACTCAACTGGCTAAAACTGAAGAAAGATTATCTTGAAAATATAGGGGACTCGCTGGATTTGGTACCTATTGCTGCTTTTCATGGCCGTGGGAAACGTACAGGGGTCTATGGAGCTTTTCTCCTTGCCTGCTATGACAGCAATAATGAAGAATTTCAAAGCATTTGTAAAATAGGCACGGGATTCTCAGAGGCAATGCTTGAAGAACGTTCTTCAAGTCTTCGTTCTAAAGTGATCCCCAAACCAAAGCCTTATTATCGATATGCAGAGACAATCAATCCTGATGTATGGTTTGAAGCCTCTGAGGTGTGGGAGGTGAAAGCAGCAGACTTGACCATTAGCCCTGTTCACCGTGCTGCCGTAGGCATAGTAGATTCAGATAAGGGCATATCTCTTCGGTTCCCTCGTCTAGTCCGAATTCGGGATGACAAAGCTCCTGAACAAGCCTCATCATCTGAGATGGTTGCTGAAATGTATTCTGCTCAAAAGCACAATCTCCCAAACAACCAGGATGATGAAGATTGA 2079 0.4209 MSSRRSAFDALMSGARAAAKKKPQSSSPQKRKTADSNSTQNPKLLKSTESTDESSEPGNDTKCVDIKDSEKAQELKKEDLSNGGLTESEGALAAKRMRVVGSQEKITEMKKKVSLMKKKPSDFDPSLISCCDKGEPVPFLFLSLAFDMINVEKGRIVITDIVCNMLRTIMNTTPEDLVAVVYLSTNKIAPPHEGLELGIGDASIIKALAEACGRTETQIRNQYKLLWNKSLKSNYELILWNLVAIMVYLLKYCGGLCSQYYYDLDHHHYLQSKLRIGYGEQTLLAALGQAAVYTEGHSVTPPEIQSPLEEAAKIVKQVYSVLPVYDKIILALVSGGVWKLPEMCNFTPGVPVGPMLSKATKGVSEVLNKFQDAEFTCEYKYDGERAQIHYMDNGSVEIYSRNAERNTGKFPDVVAAISSTRARKNVSLSDIKVDVSIFAFDILYLNGKPLLQETLKIRREHLYASFEEEPGFLQFATTITSNDVEEIHKFLDAAVDASCEGLIIKTLYEDATYEPSKRSLNWLKLKKDYLENIGDSLDLVPIAAFHGRGKRTGVYGAFLLACYDSNNEEFQSICKIGTGFSEAMLEERSSSLRSKVIPKPKPYYRYAETINPDVWFEASEVWEVKAADLTISPVHRAAVGIVDSDKGISLRFPRLVRIRDDKAPEQASSSEMVAEMYSAQKHNLPNNQDDED 692
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele12g0184 692 MobiDBLite consensus disorder prediction 1 67 - -
Lele12g0184 692 ProSiteProfiles ATP-dependent DNA ligase family profile. 428 564 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Lele12g0184 692 CDD OBF_DNA_ligase_I 534 677 - -
Lele12g0184 692 SUPERFAMILY ATP-dependent DNA ligase DNA-binding domain 121 344 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Lele12g0184 692 Gene3D DNA ligase/mRNA capping enzyme 354 418 - -
Lele12g0184 692 SUPERFAMILY DNA ligase/mRNA capping enzyme, catalytic domain 314 527 - -
Lele12g0184 692 Gene3D - 114 229 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Lele12g0184 692 Gene3D - 268 353 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Lele12g0184 692 MobiDBLite consensus disorder prediction 20 48 - -
Lele12g0184 692 Pfam ATP dependent DNA ligase C terminal region 551 662 IPR012309 GO:0003910|GO:0006281|GO:0006310
Lele12g0184 692 Gene3D - 477 530 - -
Lele12g0184 692 FunFam DNA ligase 531 690 - -
Lele12g0184 692 ProSitePatterns ATP-dependent DNA ligase signature 2. 500 526 IPR016059 GO:0003909
Lele12g0184 692 SUPERFAMILY Nucleic acid-binding proteins 534 680 IPR012340 -
Lele12g0184 692 MobiDBLite consensus disorder prediction 661 692 - -
Lele12g0184 692 MobiDBLite consensus disorder prediction 49 67 - -
Lele12g0184 692 ProSitePatterns ATP-dependent DNA ligase AMP-binding site. 378 386 IPR016059 GO:0003909
Lele12g0184 692 CDD Adenylation_DNA_ligase_I_Euk 344 529 - -
Lele12g0184 692 Pfam DNA ligase N terminus 138 224 IPR012308 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Lele12g0184 692 PANTHER DNA LIGASE 1/3 FAMILY MEMBER 419 686 - -
Lele12g0184 692 Gene3D - 531 691 IPR012340 -
Lele12g0184 692 Pfam ATP dependent DNA ligase domain 420 526 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Lele12g0184 692 Gene3D DNA ligase/mRNA capping enzyme 419 476 - -
Lele12g0184 692 TIGRFAM dnl1: DNA ligase I, ATP-dependent (dnl1) 420 677 IPR000977 GO:0003910|GO:0005524|GO:0071897
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele12g0184 Lele-ChrLele12 1424497 1432481 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele12g0184 2 688 Core DNA Replication Machinery Family AT1G08130 59.067 0.0 857