Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele12g0176 ATGGTGTCGGACGCGAGTAAGAAGAAGGCAGCACAGAAGAAGGCCGCCGCCGCTGCTAAGAGAGGAGGGAAGGCCGCTGCTGCGGCCGCTTCATCAAAAGCGGCGGCATCGGAGGCTCAGAAGGCTGCCGATAAGCTTGCCAATGGAGTTGGTGAAATCCAGATATCCGATCGTACGTGTACAGGCGTCCTCTGTTCACATCCTCTTTCGAGGGATATTCGGATAGAATCTCTATCAGTTACTTTTCATGGACATGATCTCATAGTTGATTCTGAATTGGAGCTAAATTATGGAAGACGCTATGGTCTACTTGGATTAAATGGTTGTGGAAAATCTACTCTCCTCACGGCATTAGGTTGTCGAGAGCTTCCAATTCCTGATCACATGGATATTTATCACCTTAGTCGAGAAATTGAAGCTTCTGACATGTCTGCATTGGAGGCTGTCATAAGCTGTGATGAAGAGAGGTTGAAATTGGAGAAAGAAGCTGAAATTTTGGCAGCACAGGATGATGGAGGTGGCGAAAGTCTTGAACGTGTTTATGAACGATTGGAAGCTCTGGATGCGTCTACTGCAGAAAAGCGTGCTGCTGAAATTTTACATGGCCTGGGTTTTAACAAGCAGATGCAAGCTAAGAAGACACGTGATTTTTCTGGTGGTTGGAGAATGAGGATAGCTTTAGCACGTGCTCTATTTATGAACCCAACCATTCTTTTACTTGATGAACCAACTAATCATCTAGATCTTGAAGCATGTGTATGGCTGGAGGAAAATTTGAAAAAGTTTGACCGCATTCTGGTTGTTGTTTCTCATTCTCAAGATTTTCTCAATGGTGTTTGCACAAACATCATCCACATGCAAAACAGAAAGCTAAAGCTTTACACTGGTAACTATGATCAATATGTTCAGACGCGTGCTGAATTGGAAGAAAACCAGATGAAGCAGTACAGGTGGGAACAGGAGCAGATTTCTTCAATGAAGGAATATATTGCTCGATTTGGCCATGGATCTGCTAAGCTAGCTCGCCAAGCACAGAGTAAAGAGAAAACACTGGCAAAAATGGAACGAGGTGGACTTACTGAGAAGGTTGTCAGAGACAAAGTCTTGGTATTCCGCTTTGTTGATGTGGGAAAGCTTCCCCCACCCGTGCTTCAGTTTGTTGAGGTTACTTTTGGTTACACCCCAGATAATCTCATCTACAAAAACCTTGACTTTGGGGTGGACTTAGATTCTAGGATTGCACTTGTTGGACCCAATGGAGCTGGGAAGAGTACACTGCTTAAGCTAATGACTGGGGATCTGGTTCCTACTGATGGCATGGTCCGCCGACATAACCATCTTCGTATAGCACAATTTCATCAGCACTTGGCTGAAAAGCTGGACATGGAAATGCCTGCCCTTCAGTTTATGATAAAAGAGTACCCTGGAAACGAGGAAGAGAAAATGAGGGCGGCTATTGGGAAGTTTGGACTATCAGGGAAAGCCCAGGTGATGCCTATGAAGAATTTATCTGATGGGCAGAGGAGCCGGGTAATTTTTGCTTGGTTAGCTTGGAGGCAGCCTCACATGCTACTTCTGGATGAACCAACAAACCATTTGGATATTGAGACAATTGACTCTTTGGCTGAGGCATTGAATGAATGGGATGGTGGGATGGTGCTTGTTAGTCATGATTTTAGGCTCATAAATCAGGTGGCCCATGAGATATGGGTATGTGCAGATCAAGCTGTGACCAGATGGGAGGGTGACATTATGGAATTCAAGGAGCATCTAAGGGAAAAGGCTGGTTTATCTGATTGA 1800 0.4483 MVSDASKKKAAQKKAAAAAKRGGKAAAAAASSKAAASEAQKAADKLANGVGEIQISDRTCTGVLCSHPLSRDIRIESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTALGCRELPIPDHMDIYHLSREIEASDMSALEAVISCDEERLKLEKEAEILAAQDDGGGESLERVYERLEALDASTAEKRAAEILHGLGFNKQMQAKKTRDFSGGWRMRIALARALFMNPTILLLDEPTNHLDLEACVWLEENLKKFDRILVVVSHSQDFLNGVCTNIIHMQNRKLKLYTGNYDQYVQTRAELEENQMKQYRWEQEQISSMKEYIARFGHGSAKLARQAQSKEKTLAKMERGGLTEKVVRDKVLVFRFVDVGKLPPPVLQFVEVTFGYTPDNLIYKNLDFGVDLDSRIALVGPNGAGKSTLLKLMTGDLVPTDGMVRRHNHLRIAQFHQHLAEKLDMEMPALQFMIKEYPGNEEEKMRAAIGKFGLSGKAQVMPMKNLSDGQRSRVIFAWLAWRQPHMLLLDEPTNHLDIETIDSLAEALNEWDGGMVLVSHDFRLINQVAHEIWVCADQAVTRWEGDIMEFKEHLREKAGLSD 599
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele12g0176 599 Coils Coil 291 311 - -
Lele12g0176 599 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 384 599 IPR003439 GO:0005524
Lele12g0176 599 SMART AAA_5 409 597 IPR003593 -
Lele12g0176 599 SMART AAA_5 97 299 IPR003593 -
Lele12g0176 599 Pfam ABC transporter 400 531 IPR003439 GO:0005524
Lele12g0176 599 ProSitePatterns ABC transporters family signature. 217 231 IPR017871 GO:0005524|GO:0016887
Lele12g0176 599 PANTHER ATP-BINDING TRANSPORT PROTEIN-RELATED 15 594 - -
Lele12g0176 599 Pfam ABC transporter 91 245 IPR003439 GO:0005524
Lele12g0176 599 CDD ABCF_EF-3 73 290 - -
Lele12g0176 599 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 67 316 IPR027417 -
Lele12g0176 599 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 367 578 IPR027417 -
Lele12g0176 599 CDD ABCF_EF-3 384 575 - -
Lele12g0176 599 Gene3D - 352 597 IPR027417 -
Lele12g0176 599 FunFam ATP-binding cassette sub-family F member 3 344 598 - -
Lele12g0176 599 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 73 313 IPR003439 GO:0005524
Lele12g0176 599 FunFam Abc transporter f family member 1 73 337 - -
Lele12g0176 599 Pfam ABC transporter 284 360 IPR032781 -
Lele12g0176 599 Gene3D - 73 337 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele12g0176 Lele-ChrLele12 1359929 1363476 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele12g0176 93 271 Calmodulin-binding Proteins AT2G36910 26.087 1.66e-07 52.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele29g0272 29 1610927 1616641 Lele12g0176 12 1359929 1363476 CCT
Lele30g1142 30 14370301 14376052 Lele12g0176 12 1359929 1363476 CCT
Lele09g1145 09 20565693 20567824 Lele12g0176 12 1359929 1363476 hybridization
Lele10g1115 10 22526215 22531594 Lele12g0176 12 1359929 1363476 hybridization