Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele12g0175 ATGGCCAAACTCAGAAGTAGCAGCAGTAAAAAGAAATGTGGGATCGTGAAGCTGAAGGTTGTGGTAGAGAAGATCCAAAAGAAGCTGTTACCTGGTATGAAATCGAGCTCATATCGAGACGCATGGGAAGAAGAAGAAGAAGGTAGTGATGAGTCGAGCTATGTGCCAGAAGATGTGAAAGAAGGGCATTTTGCAGCGATTGCTGAGGAGGATGGAAAGGAACCAAGGAGATTTGTGGTGCCACTAAGCTGTTTAACGCACCCATGTTTTTTGAGGCTATTGGAGGAAGCAGCGGAAGAGTATGGGTTTGATCAAGAAGGTGCACTAACCATTCCTTGCAGTGGGAGAGAGCTCGAGAGGATATTGGAGGGACACTGTGAAAGTGATGCATCAGTTAGCTGGAATGCTTGTAAACCCATGTTCTTTGATCCTCCTGCAGCCTCACCGTTTATTGGGGTAAAAAACCCCTCGTCTTTTGCCAAACCAGGGCACATCGTCAAGAACCGAGGTGCTCATGGCTCTCTCCTCAAGGAGAAAGAGTAG 543 0.4715 MAKLRSSSSKKKCGIVKLKVVVEKIQKKLLPGMKSSSYRDAWEEEEEGSDESSYVPEDVKEGHFAAIAEEDGKEPRRFVVPLSCLTHPCFLRLLEEAAEEYGFDQEGALTIPCSGRELERILEGHCESDASVSWNACKPMFFDPPAASPFIGVKNPSSFAKPGHIVKNRGAHGSLLKEKE 180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele12g0175 180 MobiDBLite consensus disorder prediction 34 55 - -
Lele12g0175 180 Pfam Auxin responsive protein 44 123 IPR003676 GO:0009733
Lele12g0175 180 PANTHER AUXIN-INDUCED PROTEIN-LIKE-RELATED 39 121 IPR003676 GO:0009733
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele12g0175 Lele-ChrLele12 1357816 1359537 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele12g0175 6 131 Calmodulin-binding Proteins AT3G43120 35.659 3.85e-16 70.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele09g1146 09 20571236 20571670 Lele12g0175 12 1357816 1359537 hybridization
Lele10g1116 10 22533342 22533776 Lele12g0175 12 1357816 1359537 hybridization