Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lele12g0159 | ATGGGAAGCAAATGGAGAAAAGTGAAGCTTGCTCTTGGAATGAATATGTGTGTTTATGTTCCTAAATCTTGGGACGATTCCTCTTCTTCCCTCAACTCCGCCACCAGACTTTCTGATGCTCACTCCCGGTCTAGTGTTTCGTCGGCGGATCATAGCTCCGGTTACCGCTCAATGACCCCGACGCCGTCTTCCTCCGGTCTCCGTCTTCCCAGAAATGGAACCAAATCTCCCAAGGGGACATGTGCAATATGCCTAACCGCGATGAAACCTGGGCTGGGGCACGCCATTTTTACTGCAGAATGCTCTCATTCTTTCCACTTCCATTGCATCACATCTAATGTAAAACATGGGAACCGGAATTGTCCTGTCTGCAGAGAAAAATGGAAAGAAGTGCCCTTTCAGGGTGCTGCTTCTAATGTTTCTCAAGGAATGTCTCAAATCAACCAACCAACTTTCCCACCAGGACAAGGTAGTGACCGGACAACTGTCTTCCGCCGGCTTCCTTCCCCACAAGGTGGTGCAGGGCGTCAGATTTCATCTCCTTATCAAGTTCCTGAACCTGCCATATTTAATGATGATGATGCTTTGGATCAGCAAACTCCTAGTATTCCTTATAAAGATCGGGATGATTCATTAGATGGGATGGAAATCAGAACATATCCTGAAATTTCAGCTGTTCCAAAATCAATTTCTCGTGATAATTTTGCTGTATTAATCCATCTCAAAGCTCCTCATTCAGGGAGACGGCAGAATAGTGGTGAAAACAATGCAAACACATCACCTTCGGATCAAAGTTCTCGTGCTCCAGTTGACCTTGTCACAGTTCTTGATATAAGCGGTAGCATGTCAGGCACTAAGCTTGCATTGCTAAAACGAGCCATGGGTTTTGTCATACAGCATCTAGGTCCAGCAGACCGACTTTCTGTTGTTGCCTTCTCCTCAACAGCCCGCCGCATCTTTCCTCTCCGGCGGATGAATGATACTGGACGGCAGGAGGCATTGCACGCTGTTAATTCGTTGGTAGCAAATGGTGGGACGAACATTGCAGAGGGCTTGAAGAAAGGTTTGAAGGTTTTTGTTGACCGTCAATGGAAGAACCCAGTCGGTAGTATCATATTACTATCTGATGGGCAGGATACATACACTGTCAATAGCAGCAGAATTCATGTTGCAAGAGATCACCAGTCACTCGTTCCGAATTCTATTCATCGCAATAATGGGGTGGGTTTGCAAATACCAGTGCACGCGTTTGGCTTTGGTGCTGACCATGATGCTACTTCCATGCACTCAATTTCTGAGGTGTCAGGGGGCACATTTTCTTTCATTGAAGCTGAGGATGTCATCCAGGATGCATTTGCACAATGTATCGGGGGACTCTTGAGCGTGGTGGTGCAGGAATTGCAGGTGGAAATAGTCTGTGTTCATCCCCGACTGCAACTTAGTTCAGTAAAAGCAGGAAGCTATAGGACCAGCATGATGGCCAATTCAAGAAAGGCTTCTATCGAAGTAGGAGATTTATATGCTGATGAAGAAAGAGATTTTTTGGTGACAGTCAACGTTCCAGTTGATGGATCCAGTGATGAGATGTCATTGGTGATCGTTAAAAGTCTTTATAGAGACCCAATCACAAAAGAAATGGTGACTTTGAAAGACAGCAGTGAAGTGAAAATCCAGAGACCTGAAATAATAGCTAGAGAGGCAACTGTTTCAATAGAAGTAGACCGGCAACGAAACCGGCTACTTGCTGCAGAGGCAATGGCTGATGCTAGAGTTGCAGCTGAACGTGGTGATTTGGCTGCTGCAGTTTCAATCCTGGATAGCCGTCTCAAGGCATTATCTGAGACCGTGTCTGCTCGAGCCGGCGACCGGCTATGTGTTGCTCTTGCTGCTGAATTAAAGGAGATGCAAGAGAGGATGGCGAACCAACGTGTGTATGAGCAATCTGGAAGGGCTTATGTTCTGTCAGGATTGAGTTCACATTCATGGCAAAGGGCAACAACAAGAGGTGATTCCACTGACAGTACCAGCCTTGTGCAAGCATACCAAACACCGTCTATGGTGGACATGGTGAGCCGTTCGCAAACAATGCTTCTGGGGTCCCCACAAGCACGACGCTCTCTCCGGCCTGCTAAATCATTTCCTGAAGGGCACCGACGACAATGA | 2163 | 0.4683 | MGSKWRKVKLALGMNMCVYVPKSWDDSSSSLNSATRLSDAHSRSSVSSADHSSGYRSMTPTPSSSGLRLPRNGTKSPKGTCAICLTAMKPGLGHAIFTAECSHSFHFHCITSNVKHGNRNCPVCREKWKEVPFQGAASNVSQGMSQINQPTFPPGQGSDRTTVFRRLPSPQGGAGRQISSPYQVPEPAIFNDDDALDQQTPSIPYKDRDDSLDGMEIRTYPEISAVPKSISRDNFAVLIHLKAPHSGRRQNSGENNANTSPSDQSSRAPVDLVTVLDISGSMSGTKLALLKRAMGFVIQHLGPADRLSVVAFSSTARRIFPLRRMNDTGRQEALHAVNSLVANGGTNIAEGLKKGLKVFVDRQWKNPVGSIILLSDGQDTYTVNSSRIHVARDHQSLVPNSIHRNNGVGLQIPVHAFGFGADHDATSMHSISEVSGGTFSFIEAEDVIQDAFAQCIGGLLSVVVQELQVEIVCVHPRLQLSSVKAGSYRTSMMANSRKASIEVGDLYADEERDFLVTVNVPVDGSSDEMSLVIVKSLYRDPITKEMVTLKDSSEVKIQRPEIIAREATVSIEVDRQRNRLLAAEAMADARVAAERGDLAAAVSILDSRLKALSETVSARAGDRLCVALAAELKEMQERMANQRVYEQSGRAYVLSGLSSHSWQRATTRGDSTDSTSLVQAYQTPSMVDMVSRSQTMLLGSPQARRSLRPAKSFPEGHRRQ | 720 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lele12g0159 | 720 | MobiDBLite | consensus disorder prediction | 149 | 212 | - | - | |
| Lele12g0159 | 720 | MobiDBLite | consensus disorder prediction | 698 | 720 | - | - | |
| Lele12g0159 | 720 | ProSiteProfiles | Zinc finger RING-type profile. | 81 | 125 | IPR001841 | - | |
| Lele12g0159 | 720 | ProSiteProfiles | VWFA domain profile. | 271 | 456 | IPR002035 | - | |
| Lele12g0159 | 720 | SUPERFAMILY | vWA-like | 267 | 456 | IPR036465 | - | |
| Lele12g0159 | 720 | Pfam | VWA / Hh protein intein-like | 622 | 695 | IPR032838 | - | |
| Lele12g0159 | 720 | Pfam | von Willebrand factor type A domain | 271 | 453 | IPR002035 | - | |
| Lele12g0159 | 720 | MobiDBLite | consensus disorder prediction | 31 | 71 | - | - | |
| Lele12g0159 | 720 | SMART | ring_2 | 81 | 124 | IPR001841 | - | |
| Lele12g0159 | 720 | MobiDBLite | consensus disorder prediction | 244 | 268 | - | - | |
| Lele12g0159 | 720 | MobiDBLite | consensus disorder prediction | 31 | 75 | - | - | |
| Lele12g0159 | 720 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 70 | 137 | IPR013083 | - | |
| Lele12g0159 | 720 | SUPERFAMILY | RING/U-box | 74 | 131 | - | - | |
| Lele12g0159 | 720 | Gene3D | von Willebrand factor, type A domain | 271 | 457 | IPR036465 | - | |
| Lele12g0159 | 720 | MobiDBLite | consensus disorder prediction | 149 | 165 | - | - | |
| Lele12g0159 | 720 | MobiDBLite | consensus disorder prediction | 248 | 268 | - | - | |
| Lele12g0159 | 720 | Pfam | Ring finger domain | 80 | 125 | IPR001841 | - | |
| Lele12g0159 | 720 | PANTHER | CALCIUM-ACTIVATED CHLORIDE CHANNEL REGULATOR | 79 | 695 | - | - | |
| Lele12g0159 | 720 | SMART | VWA_4 | 269 | 452 | IPR002035 | - | |
| Lele12g0159 | 720 | CDD | RING-H2 | 81 | 125 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Lele12g0159 | Lele-ChrLele12 | 1218218 | 1221896 | Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Lele12g0159 | 78 | 125 | C3H Transcription Factor Family | AT5G41440 | 42.857 | 1.87e-06 | 45.8 |