Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele12g0146 ATGACATCTCTTCCAATAGGGAAAAGATTGAAGCATTGGATTAACCTTGTGATTTTACTAGTTTTCTATGAGAAATGATTAGATTTGGAGATTGTGATATTGGATAGTGCAGTGTACCAGAAACAAAGTGGAGTCGGATTGGCCTTGCAAAATAAAAGGCAGCTTTGCTGTTTATCCCCTGTTGCTGTTGATTCAGTGCCCACCTCGGTTACAATCTCCGTTTCTCTAAACGCCATCGAGATTTTAGCCTCAGCGTTCGACACGTGGTGCTCTCTTGCCCACAACGAACAAATACGCACAACCAGCAGGGTAGTTCAAACAACAATGGCGAAAGACGTTGAAGTTGAAGAGCAAAGAGAGATGACGACCAAAGACTACCAGGACCCGCCTCCGGCGCCGTTGATCGATCCGGAGGAGCTAACCAAGTGGTCATTATACAGAGCCGTCATAGCGGAGTTCATAGCAACCCTTCTCTTCCTATACATCACTGTGCTGACCATTATCGGGTACAGCCAACAGACTTCCGGCACCACCGCTGACGCCCAGTGCAGAGGAGTTGGCCTACTTGGTATTGCTTGGGCCTTCGGTGGCATGATCTTCATCCTCGTTTACTGCACCGCCGGTATCTCTGGAGGGCACATAAACCCGGCCGTGACATTTGGGCTGTTCGTCGGAAGAAAGGTGTCGCTGATAAGGGCGGTGCTGTATATCTTAGCACAAATGGCCGGAGCTATCTGCGGGACTGGACTGGCCAAGGCCTTCCAGAAATCTTACTACAACAGGTATGGAGGCGGAGCCAACTTCGTACACGATGGCTATAACACTGGGACGGCTTTGGGTGCTGAGATCATCGGCACCTTCGTTCTTGTCTACACTGTCTTCTCTGCCACTGATCCTAAGAGGAGCGCCAGAGACTCCCACGTTCCTGTTTTGGCACCACTGCCCATTGGATTCGCCGTGTTCATGGTTCACTTGGCTACCATCCCAGTTACCGGTACCGGAATCAACCCAGCAAGAAGCTTCGGCGCTGCTGTTATCTACAACGATGGCAAGATCTGGGATGATCATTGGATATTCTGGGTTGGACCAATAATTGGAGCTGCGGCGGCTGCAATCTACCACCAACACATTCTGAGAGCTACGGCCATAAAAGCTCTTGGCTCTTTCAGGAGCAACGCTTAA 1182 0.5008 MTSLPIGKRLKHWINLVILLVFYEKXLDLEIVILDSAVYQKQSGVGLALQNKRQLCCLSPVAVDSVPTSVTISVSLNAIEILASAFDTWCSLAHNEQIRTTSRVVQTTMAKDVEVEEQREMTTKDYQDPPPAPLIDPEELTKWSLYRAVIAEFIATLLFLYITVLTIIGYSQQTSGTTADAQCRGVGLLGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFVGRKVSLIRAVLYILAQMAGAICGTGLAKAFQKSYYNRYGGGANFVHDGYNTGTALGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPVTGTGINPARSFGAAVIYNDGKIWDDHWIFWVGPIIGAAAAAIYHQHILRATAIKALGSFRSNA 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele12g0146 393 PRINTS Major intrinsic protein family signature 281 299 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lele12g0146 393 PRINTS Major intrinsic protein family signature 317 339 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lele12g0146 393 PRINTS Major intrinsic protein family signature 357 377 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lele12g0146 393 PRINTS Major intrinsic protein family signature 195 219 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lele12g0146 393 PRINTS Major intrinsic protein family signature 147 166 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lele12g0146 393 PRINTS Major intrinsic protein family signature 232 251 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lele12g0146 393 Gene3D Glycerol uptake facilitator protein. 132 393 IPR023271 -
Lele12g0146 393 ProSitePatterns MIP family signature. 213 221 IPR022357 -
Lele12g0146 393 Pfam Major intrinsic protein 139 374 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lele12g0146 393 TIGRFAM MIP: MIP family channel proteins 151 373 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lele12g0146 393 CDD MIP 147 377 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lele12g0146 393 FunFam Probable aquaporin PIP1-2 132 393 - -
Lele12g0146 393 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 116 382 IPR034294 -
Lele12g0146 393 SUPERFAMILY Aquaporin-like 138 379 IPR023271 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele12g0146 Lele-ChrLele12 1122476 1128435 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele12g0146 101 393 Major Intrinsic Protein MIP AT2G37170 77.474 2.44e-166 467