Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele12g0141 ATGAGTTCTGAGAAAAAGGCTGTGAGTGAAGGACATCATGCGGCCTCATGCTTAAGAACGGTTTCTCTTCCAGTTCCTAAGGTTGATGTTCCAATGGGAATGTATGAGGAATCAACTCGTGTCCGTCACTGGAAGCGGAATAATCTTCTTCTAGAAATACCCCCAAGAACATCAGAAGAGCATTCTCAAGATTTTGTTGGAATTAAGATGCCAATGACTCCCACTCCCACTCCCACTCCCAAGAGAGTGAATTTTCTTGTGACTTCACGCTCTGTTGATGCGCCGGTTCATAATTCTCCTGGGCCTTCCGCATCAAGAGGGAAATCATCCATTAAAAGTATCTTACCAAAGTTGAACTTCAAGCATAAGACATCATCAGATATTGAAAAGGCTTTTACTGCAGCTCCAGAAAGTTCTTCTTCAGTCCATCGAGAAAAACTTTCAATTGCAAGTTCGTTGTCCCTTACTAAGATATTTACACCTAGAATTAAGAGAACGTCATCATTACCAGTAGATGAACTTCATTCAAGATCGGAATCTGCTCATGCTGAAAGTGTCGGCGGATCTCTATATAGTACAAAGGAGCGGGGGCATATAGCTCGCTCTAAGTCGGTGCCTGTCACTGGTCTAGATAAGGGCATACGGAGAATGGATTCGTTTTACCGTGTTATTCCTTCAACTCCTCATGTAAAGGGCAAAAAAGAATTGTTGACCACATCCCCTTCCAAGGATACCGAAAACAACGAAGACGACGATGATGAAGGTGAAGATATAGCTGAAGAAGATGCAGTTTGTAGGATTTGTTTGGTTGATCTATGCGAAGGAGGTGAAACCATCAAGTTGGAATGCAGCTGCAAAGGTGAACTTGCTCTGGCACACCAAGAATGTGCCATTAAATGGTTTAGTATCAAAGGTAATAAGACCTGTGACGTGTGCAAGGAGGAGGTCCGGAACCTACCCGTCACACTCTTAAGGATCCAAAATGTTGTAAATCAGAATATGGCTAATAGGTCCCAGCAGGCAGACGCAAGTGCATACAGGGTTTGGCAGGAAGTTCCTGTGCTTGTAATTGTGAGCATGCTAGCTTATTTCTGTTTTCTTGAGCAGCTATTGGTTGGAAGAATGGGTACTGGTGCAATTGCTATATCTCTTCCATTCTCATGTGTACTGGGTCTGCTCTCCTCCATGACTTCATCAACCATGGTGAATAGCAGGTTCATCTGGTTTTATGCTTCCTCCCAATTCGCTCTCGTGGTTCTTTTCGCGCATATATTTTACTCCCTGGTTCATGTGCAGCCAGTTTTGGCGATCCTTCTTGCAACATTTGCAGGGTTTGGTATAGTGATGAGTGGGAGCTCTGTACTCGTCGAAATTGTTCGATGGAGAAGAAGATGGCTGGCAGTATCAGAGCAGCGCCATGGTCCTCATGGTTCAGTGCAAGCACATTCAGAGGCTACTGAGTTTTCTTCAACCATCGGTTCTTCCCCACCATATCCTTCCCTTACAGAAATCATTTTCTCCTCCAGGTGA 1530 0.4425 MSSEKKAVSEGHHAASCLRTVSLPVPKVDVPMGMYEESTRVRHWKRNNLLLEIPPRTSEEHSQDFVGIKMPMTPTPTPTPKRVNFLVTSRSVDAPVHNSPGPSASRGKSSIKSILPKLNFKHKTSSDIEKAFTAAPESSSSVHREKLSIASSLSLTKIFTPRIKRTSSLPVDELHSRSESAHAESVGGSLYSTKERGHIARSKSVPVTGLDKGIRRMDSFYRVIPSTPHVKGKKELLTTSPSKDTENNEDDDDEGEDIAEEDAVCRICLVDLCEGGETIKLECSCKGELALAHQECAIKWFSIKGNKTCDVCKEEVRNLPVTLLRIQNVVNQNMANRSQQADASAYRVWQEVPVLVIVSMLAYFCFLEQLLVGRMGTGAIAISLPFSCVLGLLSSMTSSTMVNSRFIWFYASSQFALVVLFAHIFYSLVHVQPVLAILLATFAGFGIVMSGSSVLVEIVRWRRRWLAVSEQRHGPHGSVQAHSEATEFSSTIGSSPPYPSLTEIIFSSR 509
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele12g0141 509 MobiDBLite consensus disorder prediction 170 197 - -
Lele12g0141 509 SMART ringv_2 264 313 IPR011016 GO:0008270
Lele12g0141 509 PANTHER OS02G0165000 PROTEIN 34 475 - -
Lele12g0141 509 Pfam RING-variant domain 265 312 IPR011016 GO:0008270
Lele12g0141 509 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 249 320 IPR013083 -
Lele12g0141 509 ProSiteProfiles Zinc finger RING-CH-type profile. 257 319 IPR011016 GO:0008270
Lele12g0141 509 MobiDBLite consensus disorder prediction 232 256 - -
Lele12g0141 509 SUPERFAMILY RING/U-box 261 316 - -
Lele12g0141 509 CDD RING_CH-C4HC3_MARCH 265 313 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele12g0141 Lele-ChrLele12 1088810 1096356 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele12g0141 249 319 C3H Transcription Factor Family AT2G37950 48.611 2.18e-14 70.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele09g1182 09 20834156 20837808 Lele12g0141 12 1088810 1096356 hybridization
Lele10g1157 10 22822265 22827220 Lele12g0141 12 1088810 1096356 hybridization