Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele12g0128 ATGGCGACTAATCGTTTCGTATGCGAAATCTGCAATAAGGGCTTCCAGAGGGACCAGAACTTGCAGCTGCACCGCCGTGGGCACAATCTTCCGTGGAAGCTCCGGCGGAGAACCAACAAGGAAGTGAAGAAGAAGGTGTATGTTTGCCCTGAGAAGACCTGCGTGCACCACGATCCCTCCAGAGCCCTCGGAGACCTCACGGGGATAAAAAAACACTTCAGCAGAAAGCACAGCGAGAAAAAGTGGAAGTGCGAAAAATGTTCCAAGAAATACGCGGTTCAATCCGATTGGAAAGCCCATAGCAAGATTTGTGGCGCTCGAGAGTACAAATGTGACTGTGGCACCATTTTCTCCAGGAAGGACAGCTTCATAACTCACAGAGCTTTCTGTGCCGCTTTGGCAGAAGAAAGTGCTAGAAATACAACAATAACAACTGTACCTTCAGCTTTTACAAACCTCAGAAGCGACCATTTGATGATGAGCATGAATAATCACCAAACACCACGAGTAATCCCTGAGATACTTCCAAGGTTTCATCCGGATCAATTCGGAGGTAATTCTGAAGGAGCATTGGGGAATTTTGGTTTGCTCAACAATTTGAATTCCCGGTTTCCGGATTTAGTCCAAGGCATGGACATCTTTGGGACATCAACGCATCATCAGACGCAACAGTGGGTTAACGTTAATCGATTCCCAGAAGCAGATTCATCAATTACAACCAGTGCCAACGTTAACATGTGTGTGTCTCGAATAGTGCCACATGGACTGAAGCAAGAACCGGAAGAAAACAAACAAGAGTTGTCGCATAGTATAGGAGCTTTGTACTCGGGTCATCAGTTTCAGAACCCACAAGCAGCAGTAGGAGCAGTGAGTCACATGTCAGCCACTGCACTCTTACAGAAAGCAGCTGAAATCGGATCTACAACCACTAATAACAATGTCGTTAACAACACATCCTCCTCCTTCAACTCTATCAACCACTTCGGATTAATGGGTTCAGCTGTTTTAAACTCCTCCAACAACAGCAATAACGTTGTTGACCTTCACAAAATTTTCAAGCAAACGGTTAACAATAGTACCAACCTTGCAGGAGGTAATCGGTTTCTGTTAAATGACTCCCACCCAAGATCGACGTTTGCGGGCACCGCCGTCAAGGGTTTGCGTTCGAGCTCAAACAAAGAGGAGCTAGGTTTAACCAGAGACTTTCTGGGCGTTGGAGGGGACTCGTTGAGCGGACCCTTTCTGGAGCAAGAGTTAGCCAAGTTCAATACAGCTTCAGCCTTGGACCTGAGCCAGTACGGCGCGCATCACTGGTCGTAA 1320 0.4697 MATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRRRTNKEVKKKVYVCPEKTCVHHDPSRALGDLTGIKKHFSRKHSEKKWKCEKCSKKYAVQSDWKAHSKICGAREYKCDCGTIFSRKDSFITHRAFCAALAEESARNTTITTVPSAFTNLRSDHLMMSMNNHQTPRVIPEILPRFHPDQFGGNSEGALGNFGLLNNLNSRFPDLVQGMDIFGTSTHHQTQQWVNVNRFPEADSSITTSANVNMCVSRIVPHGLKQEPEENKQELSHSIGALYSGHQFQNPQAAVGAVSHMSATALLQKAAEIGSTTTNNNVVNNTSSSFNSINHFGLMGSAVLNSSNNSNNVVDLHKIFKQTVNNSTNLAGGNRFLLNDSHPRSTFAGTAVKGLRSSSNKEELGLTRDFLGVGGDSLSGPFLEQELAKFNTASALDLSQYGAHHWS 439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele12g0128 439 ProSiteProfiles Zinc finger C2H2 type domain profile. 6 28 IPR013087 -
Lele12g0128 439 SUPERFAMILY beta-beta-alpha zinc fingers 5 102 IPR036236 -
Lele12g0128 439 Gene3D Classic Zinc Finger 39 130 - -
Lele12g0128 439 FunFam Zinc finger protein MAGPIE 2 29 - -
Lele12g0128 439 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 1 417 IPR031140 -
Lele12g0128 439 ProSitePatterns Zinc finger C2H2 type domain signature. 8 28 IPR013087 -
Lele12g0128 439 SMART c2h2final6 6 28 IPR013087 -
Lele12g0128 439 SMART c2h2final6 47 77 IPR013087 -
Lele12g0128 439 SMART c2h2final6 82 102 IPR013087 -
Lele12g0128 439 Gene3D Classic Zinc Finger 2 29 - -
Lele12g0128 439 FunFam protein indeterminate-domain 5, chloroplastic-like 60 139 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele12g0128 Lele-ChrLele12 1023734 1025465 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele12g0128 1 142 IDZ Gene Family AT5G66730 88.732 3.64e-94 291
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lele12g0128 None None None