Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele12g0121 ATGGATTTAGTCAATAGTTGCAAGGAAAAGTTGACATATTTTCGTATAAAAGAGCTCAAAGATGTACTCACCCAGTTAGGCCTTTCAAAACAGGGAAAGAAGCAGGATCTTGTTGATCGGATATTAGCCATTCTCTCAGATGAACAAGTTTCCAAATTGTGGGCTAAAAAGAATGCAGTTGGAAAAGATCAGGTGGCAAAATTAGTGGATGACACATATAGAAAGATGCAGATATCTGGAGCAACTGAGCTGGCATCAAAGGGTATGTCAGATAGTAGTAATGTGAAAATTAAAGGTGAAATTGAAGATTCCTTGCAGTCAGTTACAAAGATTCGCTGTCTCTGTGGAAGTTCTTTGGAAACAGAGGCATTGATCAAGTGTGAGGATGCAAGATGTCAAGTGTGGCAACACATGAGTTGTGTTTTAATTCCTGATAAACCTACGGAAGGCAACCCACCGGTTCCTGATAAATTCTATTGTGAGATCTGTCGTCTCAGTCGCGCTGACCCTTTTTGGGTTCCAGTGGCACATCCTTTGTTTCCTGTGAAGTTGACCACAGCTGCTGTTCCAACTGATGGCACTAATCCTGTGCAGAGTGTGGAGAGATCATTTCAACTTACAAGAGCAGACAAGGACTTGGTGTCTAAACCAGAATTTGATGTTCAGGCTTGGTGCATGCTTCTGAATGACAAGGTCCCATTCAGGATGCAGTGGCCTCAATATACTGATCTACAGGTCAATGGTGTACCTGTCCGTGCCATCAACAGACCTGGCTCACAATTACTTGGGGCTAATGGTCGAGATGATGGTCCAATTATCACACCATATACAAAAGATGGAATAAACAAGATTTCCTTAACGGGGTGTGATGCTCGCCCTTTCTGTTTAGGGGTTCGTATTGTGAGAAGGCGGACCATGCAACAGATCCTAAGCATAATTCCAAAAGAGTCTGATGGTGAGCCTTTTGAAGATGCTCTTGCACGTGTCTGCCGATGTGTTGGTGGTGGTAATGTAGATGATAATGCTGATAGTGACAGTGATCTAGAAGTTGTTTCAGATACCTTTAGCATCAACCTCCGCTGTCCAATGAGTGGTTCAAGGATGAAGGTTGCTGGAAGATTCAAGCCTTGTGTTCACATTGGTTGTTTTGATCTTGAAGTTTTTGTGGAAATGAATCAGCGGTCGAGGAAGTGGCAATGTCCTATCTGTCTCAAAAATTATACATTGGAGAATATCATTGTAGACCCTTACTTCAACCGTATCACATCTAAGATGATAAATTGCGGTGAAGATGTGACAGAGGTTGAAGTGAAGCCTGATGGTTCTTGGCGTGTCAAGGCTAAGAGTGAAATTGAACGCCGAGATTTGGGTAATCTTGCACAATGGCACTTTCCTGATGGATCGCTCTGTGTTTCTACTGATGAAGTCAATAGAGTGGATGCATTTAAGCAGATAAAACAGGAGGGTGTTTCTGACAGTCCTGGTTTGAAACTTGGCATTAGAAAGAATCACGATGGAGTTTGGGTTTTCAGCAAGCCCAATGACACCAATACATCATCAGGCAATAGATTGAAAGAGAACTTTGGTAATCATGAACAGGTGGTTATTCCAATGAGCAGCAGTGCCACTGGGAGTGGCCGTGAGGGTGATGACCCTAGTGTAAATCAGGGTGGTGGTGGACATATTGATTTCTCTAACAATGGGACGGAAATGGATTCTTTCTTTCTTAATAATGTTGATTCAGCATATGGGTTTGCAGAAAATAACGCTACTGCTCCAACTGGGGATGCTGAAGTTATTGTTCTAAGCGATTCTGAGGAAGAGAATGGCATGTTGGTATCTTCTGCAAATGACTACAAGAATAATCGAACTGATGCTGTTGGTGTTGGTTACCCTGTGCCACCTTCTGGGATTGCTGATTCATATACAGAAGATCCCACCCTTAGTGGCTTGGGACTTTTTAGTACTAATGAAGATGAGTTTGATATGCCTTCCCTTTGGCCATTGCCTTCTGGAACTCAGGCAGGTGCAGGATTTCAGTTATTCACTTCTGATGCAGATGTGTCGGATGCATTGGTCCATCTGCAGCATGGTCCTGTTAATTGTTCCACATCACTGAATGGTTATGCATTGGCACCAGACACTACTTTAGGATCTAGTACTCTCATGCCAGATGCCTCTGCTGGTCGGTCTGATACTGATTTAAATGGTGGTTTAGTCGACAATCCACTGGCATTTGCTGGAGATGATCCCTCACTCCAAATATTTCTCCCCACTAGACCTGCAGAATCATCTGGGCAGCATGAATTGAGAGACCAGGCAGATGTGTCTAATGGTGTCTGCAATGAGGATTGGATTTCTCTTCGGCTTGGAGGTGGTGCTGGTGGTACTAACAGCCATGCTACAACTCCAAATGATCTGAATTCTAGGCAACAAATTCCGTCCAGAGAACCTTCCACAGATGCTATTACTGATACTGCTTCTTTGCTTCTTGGTATGAATGATGCTAGATCTGACAAGGCAATTAAGCAAAGGTCGGATAGCCCTTTCTCATTTCCCCGCCAAAAACGTTCAGTAAGGCCCCGCCTGTATCTCTCTATTGATTCGGATTCAGAGTAG 2619 0.4345 MDLVNSCKEKLTYFRIKELKDVLTQLGLSKQGKKQDLVDRILAILSDEQVSKLWAKKNAVGKDQVAKLVDDTYRKMQISGATELASKGMSDSSNVKIKGEIEDSLQSVTKIRCLCGSSLETEALIKCEDARCQVWQHMSCVLIPDKPTEGNPPVPDKFYCEICRLSRADPFWVPVAHPLFPVKLTTAAVPTDGTNPVQSVERSFQLTRADKDLVSKPEFDVQAWCMLLNDKVPFRMQWPQYTDLQVNGVPVRAINRPGSQLLGANGRDDGPIITPYTKDGINKISLTGCDARPFCLGVRIVRRRTMQQILSIIPKESDGEPFEDALARVCRCVGGGNVDDNADSDSDLEVVSDTFSINLRCPMSGSRMKVAGRFKPCVHIGCFDLEVFVEMNQRSRKWQCPICLKNYTLENIIVDPYFNRITSKMINCGEDVTEVEVKPDGSWRVKAKSEIERRDLGNLAQWHFPDGSLCVSTDEVNRVDAFKQIKQEGVSDSPGLKLGIRKNHDGVWVFSKPNDTNTSSGNRLKENFGNHEQVVIPMSSSATGSGREGDDPSVNQGGGGHIDFSNNGTEMDSFFLNNVDSAYGFAENNATAPTGDAEVIVLSDSEEENGMLVSSANDYKNNRTDAVGVGYPVPPSGIADSYTEDPTLSGLGLFSTNEDEFDMPSLWPLPSGTQAGAGFQLFTSDADVSDALVHLQHGPVNCSTSLNGYALAPDTTLGSSTLMPDASAGRSDTDLNGGLVDNPLAFAGDDPSLQIFLPTRPAESSGQHELRDQADVSNGVCNEDWISLRLGGGAGGTNSHATTPNDLNSRQQIPSREPSTDAITDTASLLLGMNDARSDKAIKQRSDSPFSFPRQKRSVRPRLYLSIDSDSE 872
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele12g0121 872 ProSitePatterns Zinc finger PHD-type signature. 113 163 IPR019786 -
Lele12g0121 872 ProSiteProfiles Zinc finger SP-RING-type profile. 344 427 IPR004181 GO:0008270
Lele12g0121 872 Gene3D SAP domain 1 61 IPR036361 -
Lele12g0121 872 MobiDBLite consensus disorder prediction 796 820 - -
Lele12g0121 872 SUPERFAMILY SAP domain 1 63 IPR036361 -
Lele12g0121 872 MobiDBLite consensus disorder prediction 540 565 - -
Lele12g0121 872 MobiDBLite consensus disorder prediction 792 820 - -
Lele12g0121 872 SUPERFAMILY FYVE/PHD zinc finger 108 167 IPR011011 -
Lele12g0121 872 Pfam MIZ/SP-RING zinc finger 357 405 IPR004181 GO:0008270
Lele12g0121 872 PANTHER ZINC FINGER MIZ DOMAIN-CONTAINING PROTEIN 9 641 - -
Lele12g0121 872 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 101 169 IPR013083 -
Lele12g0121 872 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 335 445 IPR013083 -
Lele12g0121 872 SMART PHD_3 112 164 IPR001965 -
Lele12g0121 872 FunFam E3 SUMO-protein ligase SIZ1 1 66 - -
Lele12g0121 872 SMART sap_9 11 45 IPR003034 -
Lele12g0121 872 CDD PHD_Bye1p_SIZ1_like 112 163 - -
Lele12g0121 872 ProSiteProfiles SAP motif profile. 11 45 IPR003034 -
Lele12g0121 872 Pfam SAP domain 14 42 IPR003034 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele12g0121 Lele-ChrLele12 974398 983394 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Lele12g0121 zf-MIZ 2.9e-19 CL0229
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele29g0199 29 1157548 1165333 Lele12g0121 12 974398 983394 CCT
Lele30g1206 30 14819218 14828754 Lele12g0121 12 974398 983394 CCT
Lele09g1198 09 20931760 20942696 Lele12g0121 12 974398 983394 hybridization
Lele10g1175 10 22939396 22948718 Lele12g0121 12 974398 983394 hybridization