Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele12g0102 ATGTCTGTTTCGTGCCACGTGTCTTATATTTACACGTGGGTCAGGGGCGCTCTTCCGACAGAGAGACGAAAACAGCATTGTCCTAAGAACAACTGGTCGGTGGATTCTGCAAATATCAACGTGGCAGAGACGAGGGGAGAGATGGAGCAATCAGAAAAACCAGCAAAGCAATCATCACAAAGGTCGTCATTTCCGAGGGACCCTCGTGGTTCGCTAGAAGTGTTCAATCCTTCTTCCTACTCAACGGACAGTCCATCAGACTCGCCGTTCCGATCTCAGCCAAAGTGGAAAACTTGGATCGAGTCACCAACAACCACCGCCACCAACAAGGATGAAATCTCCAGCACATCATGGATGGCCCTCAAGGATTCCGATGGTTTGCAGCCGCAGACTCTGTCCGCCATTCTCAACGAGCGACCTGAGCTGACCCCGAAATCTCCGTCCGCCGTGAATTTAGCCGGAGACTTAGGTACGGCAGCGCAGAGAGCGGCTGAGTGGGGATTGGTACTGAAGACTGACACCGAGACGGGCAAGCCGCAAGGAGTGGCTGTGAGAAACTCGGGAGGAGAGGAACCAAATTCGAAGATCTCCGGTACTTCGAGAAGGAACTCAAACAACTCGGTGAGAAGCTCCGGCGAATCGTCGGACGACGGAGGAAAAGAAATACGGGGATTCCCGAGAGTTTCAGAAGATCTGAAGGATGCTCTGTCGATGTTCCAACAGACTTTCGTGGTCTCGGATGCGACCAAACCCGATTATCCGATCATGTACGCGAGTGCCGGATTCTTTAAGATGACGGGATATACTTCCAAAGAGGTCATCGGGAGGAACTGTCGATTTTTACAGGGAGCGGAAACGGATCCAGAGGACGTTGCAAAGATAAGGGAGGCGCTGCACGCTGGGACGAGCTACTGCGGAAGATTACTGAATTACAAGAAGGATGGCACTCCTTTCTGGAACCTTCTCACTATATCCCCCATCAAAGACGACGATGGCAAAGTCCTCAAATTTATTGGAATGCAAGTGGAGGTTAGCAAGCATACGGAGGGGTCCAAGGAGAAAACGCTTCGCCCTAATGGATTGCCCGAATCTTTGATTCGATATGATGCTCGTCAAAAAGAGAAGGCTTCCTCCGTAGTAACTGAGTTAGTGACGGCAGTGAAGCGGCCCCGAGCATTAAGTGAATCAGGAAAGCGTCCATTGATCAGAAAATCTTTAGGTGATGAAGAACAAAGAGTAGAACATTTGCCAAGGAGGAAATCAGAGAGCGTTGCTGCATTACGACCAAAACCACATGGAGGGCATCGAAATTCCATGCAGCAAATCAATGAGCTACCTGAAAAGAAGCAGAAAAATCGCCGTCGTTCTTTCATGGGGTTCATTAAGAAAAGTCAGTCCAGTGATGAAAGCATTGAGGACAATGAAGTGGTGGAGGGCAGCTCAGAGTGTGAGGAAGAAGACGAGAGGCCCGATAGCATTGATGACAGCAAACTAGCGCAAAGGGAGAAGCGAAAGGGTCTTGATCTTGCGACGACACTTGAACGTATAGAGAAGAACTTTGTCATTACAGATCCAAGATTGCCTGATAATCCCATCATCTTTGCATCTGATAGTTTCCTAGAACTTACAGAGTACAGTCGTGAAGAAATTTTGGGAAGAAATTGCAGGTTTTTGCAAGGACCTGAAACTGATCCAGCAACTGTGAGAAAAATTAGAGAGGCAATTGACAACCAAAAAGAAGTTACGGTGCAGCTGATTAATTATACAAAGAGTGGCAAAAAATTCTGGAACCTGTTTCATCTGCAACCTATGCGTGATCAGAAGGGAGAAGTACAGTATTTCATTGGTGTTCAACTTGATGGTAGCCAGCATGTGGAACCTCTTCATAACTGTATTGCAGAAGACACGGCAAAGGAGGGAGAACAGTTGGTTAAAAACACTGCAGAAAATGTTGATGAGGCAGTGAGAGAACTTCCAGATGCCAATTTGAAACCAGAAGATTTATGGTTAAATCACTCAAAAGTGGTTCATCCAAAGCCTCATAGGAAGGATAACCCTGCTTGGGGAGCTATCCTGAAGATCCTAAAAAGTGGAGAACAGATAGGCTTGAAGCATTTTAGGCCAGTCAAACCTTTGGGATCTGGGGACACTGGCAGTGTGCATTTGGTGGAGCTATGTGGAACTGGCCAGTATTTTGCCATGAAGGCTATGGATAAGGGTGTTATGCTAAATCGCAACAAGGTGCATAGAGCTTGCACAGAGAGAGAAATCCTCGACATGTTGGACCATCCTTTTCTTCCCGCATTATACGCTTCTTTTCAGACCAAAACGCACATTTGCCTGATAACTGATTATTGTCCCGGTGGAGAACTGTTCCTTCTTCTCGACCGACAGCCAACAAAAGTTATCAAAGAAGATGCAGCAAGGTTTTACGCTGCTGAGGTTGTGGTTGCGCTGGAGTACCTACATTGTCAAGGAATAATATATCGAGATTTGAAGCCAGAAAATGTGTTACTCCAGAGTAATGGGCATGTGTCTCTGACAGATTTTGACTTGTCATGTTTAACATCCAGCAGACCACAGCTTTTGATGCCACCATCAAACGAAAAGAAGAAACAGAAAGGACAGCAGGCTCCAATATTTGTGGCCGAACCAATGAGAGCTTCAAATTCTTTTGTTGGCACAGAAGAGTACATAGCTCCGGAAATTATAACTGGTTCAGGCCATACTAGTGCTGTGGATTGGTGGGCTCTTGGTATTCTTCTATACGAAATGATGTATGGATACACACCATTCAGGGGGAAGACAAGGCAAAAAACATTTGCTAATATTCTTCACAAGGATCTTAAATTTCCCAAAAGTAAACCGGTAAGTCTCCATGCCAAGCAGCTGATTCACCGGTTGCTGCACAGAGATCCCAAGAACCGATTGGGGTCACAGGAAGGAGCAAACGAAATAAAGCGTCATCCATTCTTCAAAGGTGTCAATTGGGCCCTCGTTCGTACCATGAGCCCTCCTGACCTGGACTCTCCTCTCTTCGGCGCAACTGAAGAAGAGAAGGAAGTCAGAATTGTTGATCCTGCCCTGGAGGAACTACGAACAGATTTTTTCTGA 3114 0.466 MSVSCHVSYIYTWVRGALPTERRKQHCPKNNWSVDSANINVAETRGEMEQSEKPAKQSSQRSSFPRDPRGSLEVFNPSSYSTDSPSDSPFRSQPKWKTWIESPTTTATNKDEISSTSWMALKDSDGLQPQTLSAILNERPELTPKSPSAVNLAGDLGTAAQRAAEWGLVLKTDTETGKPQGVAVRNSGGEEPNSKISGTSRRNSNNSVRSSGESSDDGGKEIRGFPRVSEDLKDALSMFQQTFVVSDATKPDYPIMYASAGFFKMTGYTSKEVIGRNCRFLQGAETDPEDVAKIREALHAGTSYCGRLLNYKKDGTPFWNLLTISPIKDDDGKVLKFIGMQVEVSKHTEGSKEKTLRPNGLPESLIRYDARQKEKASSVVTELVTAVKRPRALSESGKRPLIRKSLGDEEQRVEHLPRRKSESVAALRPKPHGGHRNSMQQINELPEKKQKNRRRSFMGFIKKSQSSDESIEDNEVVEGSSECEEEDERPDSIDDSKLAQREKRKGLDLATTLERIEKNFVITDPRLPDNPIIFASDSFLELTEYSREEILGRNCRFLQGPETDPATVRKIREAIDNQKEVTVQLINYTKSGKKFWNLFHLQPMRDQKGEVQYFIGVQLDGSQHVEPLHNCIAEDTAKEGEQLVKNTAENVDEAVRELPDANLKPEDLWLNHSKVVHPKPHRKDNPAWGAILKILKSGEQIGLKHFRPVKPLGSGDTGSVHLVELCGTGQYFAMKAMDKGVMLNRNKVHRACTEREILDMLDHPFLPALYASFQTKTHICLITDYCPGGELFLLLDRQPTKVIKEDAARFYAAEVVVALEYLHCQGIIYRDLKPENVLLQSNGHVSLTDFDLSCLTSSRPQLLMPPSNEKKKQKGQQAPIFVAEPMRASNSFVGTEEYIAPEIITGSGHTSAVDWWALGILLYEMMYGYTPFRGKTRQKTFANILHKDLKFPKSKPVSLHAKQLIHRLLHRDPKNRLGSQEGANEIKRHPFFKGVNWALVRTMSPPDLDSPLFGATEEEKEVRIVDPALEELRTDFF 1037
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele12g0102 1037 MobiDBLite consensus disorder prediction 74 111 - -
Lele12g0102 1037 SMART pac_2 305 347 IPR001610 -
Lele12g0102 1037 SMART pac_2 582 624 IPR001610 -
Lele12g0102 1037 ProSiteProfiles PAS repeat profile. 505 578 IPR000014 -
Lele12g0102 1037 MobiDBLite consensus disorder prediction 392 426 - -
Lele12g0102 1037 ProSiteProfiles PAS repeat profile. 228 299 IPR000014 -
Lele12g0102 1037 Gene3D PAS domain 494 658 - -
Lele12g0102 1037 SMART pas_2 507 576 IPR000014 -
Lele12g0102 1037 SMART pas_2 230 299 IPR000014 -
Lele12g0102 1037 ProSiteProfiles Protein kinase domain profile. 706 992 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele12g0102 1037 Gene3D Phosphorylase Kinase; domain 1 705 789 - -
Lele12g0102 1037 CDD PAS 255 344 IPR000014 -
Lele12g0102 1037 FunFam LOV domain-containing protein 705 789 - -
Lele12g0102 1037 TIGRFAM sensory_box: PAS domain S-box protein 530 620 IPR000014 -
Lele12g0102 1037 TIGRFAM sensory_box: PAS domain S-box protein 255 348 IPR000014 -
Lele12g0102 1037 CDD PAS 520 620 IPR000014 -
Lele12g0102 1037 SUPERFAMILY Protein kinase-like (PK-like) 690 1011 IPR011009 -
Lele12g0102 1037 MobiDBLite consensus disorder prediction 471 491 - -
Lele12g0102 1037 ProSitePatterns Protein kinases ATP-binding region signature. 712 735 IPR017441 GO:0005524
Lele12g0102 1037 FunFam LOV domain-containing protein 494 658 - -
Lele12g0102 1037 MobiDBLite consensus disorder prediction 190 213 - -
Lele12g0102 1037 MobiDBLite consensus disorder prediction 44 111 - -
Lele12g0102 1037 PANTHER FLIPPASE KINASE 1-RELATED 204 1010 - -
Lele12g0102 1037 CDD STKc_phototropin_like 704 1011 - -
Lele12g0102 1037 MobiDBLite consensus disorder prediction 172 224 - -
Lele12g0102 1037 SUPERFAMILY PYP-like sensor domain (PAS domain) 249 341 IPR035965 -
Lele12g0102 1037 ProSitePatterns Serine/Threonine protein kinases active-site signature. 827 839 IPR008271 GO:0004672|GO:0006468
Lele12g0102 1037 Coils Coil 637 657 - -
Lele12g0102 1037 MobiDBLite consensus disorder prediction 389 500 - -
Lele12g0102 1037 Pfam PAS domain 249 345 IPR000014 -
Lele12g0102 1037 Pfam PAS domain 528 620 IPR000014 -
Lele12g0102 1037 FunFam Putative LOV domain-containing protein 242 398 - -
Lele12g0102 1037 Gene3D Transferase(Phosphotransferase) domain 1 790 1003 - -
Lele12g0102 1037 ProSiteProfiles PAC domain profile. 302 356 IPR000700 -
Lele12g0102 1037 FunFam Putative LOV domain-containing protein 790 1004 - -
Lele12g0102 1037 Gene3D PAS domain 242 414 - -
Lele12g0102 1037 SUPERFAMILY PYP-like sensor domain (PAS domain) 521 620 IPR035965 -
Lele12g0102 1037 ProSiteProfiles PAC domain profile. 579 633 IPR000700 -
Lele12g0102 1037 Pfam Protein kinase domain 709 992 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele12g0102 1037 SMART serkin_6 706 992 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele12g0102 Lele-ChrLele12 847259 858597 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele12g0102 48 1037 AGC Kinase Gene Family AT3G45780 70.801 0.0 1380
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Lele12g0102 Pkinase 2.3e-65 CL0016