Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele12g0100 ATGCAAAACAGTGGGCGGTCTCTGTCAGAAAGTGCATTGAGGAGCGAAAGTAGTATGATCATCGAAGGAATGAGCAGAGCGTATCCTTACAGCCCGGAGGAGAAGAAGGTGAGGATTGAGAGATACAGAATCAAGAGACATAAGAGGAACTTCAAGAAGAAAGTTAAGTATGAATGCAGGAAGACATTGGCAGAGAACAGGCCGCGCATCAGAGGAAGATTTGCAAAGAGCGAAGAAAGTGACAAGAAGAGTCATATGATTGAGAATGAGAGTGGAGAAGAGGAAGATGAGAATTGGGCCAGTTTTTTTGAAAACTTGGCAGCGGCAAATCTTGTTCACGAACCATGA 348 0.4425 MQNSGRSLSESALRSESSMIIEGMSRAYPYSPEEKKVRIERYRIKRHKRNFKKKVKYECRKTLAENRPRIRGRFAKSEESDKKSHMIENESGEEEDENWASFFENLAAANLVHEP 115
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele12g0100 115 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 22 100 IPR045281 GO:0009909
Lele12g0100 115 Pfam CCT motif 37 77 IPR010402 GO:0005515
Lele12g0100 115 MobiDBLite consensus disorder prediction 73 90 - -
Lele12g0100 115 ProSiteProfiles CCT domain profile. 35 77 IPR010402 GO:0005515
Lele12g0100 115 MobiDBLite consensus disorder prediction 73 97 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele12g0100 Lele-ChrLele12 840542 841029 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele12g0100 23 87 C2C2-CO-like Transcription Factor Family AT5G24930 43.077 1.86e-14 65.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Lele12g0100 CCT 8.9e-17 CL0281
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele12g0100 12 840542 841029 Lele29g0181 29 1018552 1022318 CCT
Lele12g0100 12 840542 841029 Lele30g1226 30 14990167 14993869 CCT
Lele12g0100 12 840542 841029 Lele31g1372 31 19554612 19558379 CCT
Lele12g0100 12 840542 841029 Lele32g0170 32 983394 988508 CCT
Lele09g1221 09 21109967 21110921 Lele12g0100 12 840542 841029 hybridization
Lele10g1196 10 23128797 23129281 Lele12g0100 12 840542 841029 hybridization