Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele12g0092 ATGAGACTCTCTAAGGAAGATCCATCAAGTAGTGATGCCCAGGCTGTTGACCTCATATCAGCAGTGAAGGAGTTACATGGGCTTAGTTCTCAGGAACTTAATAGATTATTGAGGGACTCTGAAAATTTTACTATTCACTACCTAACCAGAAAAGGATCAACGAGCAAGATTGATATGGAAAAGCTTGCAGGATCTCTTCCATTGCATCTTATTGCAGTACTAATGTCATCTGATAGGGATGAATCAATGATGAGATACGTGTTATGTGGTATACGCCTCTTGCATTCCTTGTGTGATTTATCTCCTCGTCACCCTAAGCTTGAACAGATTTTTCTAGATGATGTGAAAGTGTTGGAACAGTTGATTGACTTGGTTTTCTATGTGATAGTAGTGCTTGGTGGTTACAGACAGGAAGGCCATACTTTTAGTCTTAAGCACCTTTTGCATTCGGCTCTTGTGGGATGCAGTTTACATCTATTAACTGGGTTTATATCAACGCAATGGCAAGATATTGTTCATGTATTGCTTGCGCACCCCAAGGTTGACATATTTATGGATATGGCTTTTGGATCAGTTCGCATGGTTGTAAGGTTTCTTGAGATTACCCTGTCAGCTTACCATGAAGGCGACTTCATGGAACCAAATCTAACAGCTGAACGAGTAGTTTATTTTCTCACCCAGCAGTGTGAGGCTTCTTTACAGTTTCTTCAGTCATTGTGCCAGCAAAAATTGTTTAAGGAGCGCCTACTCAAGAATAAGGAACTATGTGGAAAGGGCAGTATTCTTTTTCTGATTAGGTCCATTCTGAAGTTAAACATTCAACCATATTTTCCAATCAGGATTATGGCTGCTTTGTCCCGGCTAAAATCTAAGATACTATCCCTCCTGCTGAGTTTGTGTGAAGCAGAAAACGCTTCTTATCTTGATGAAGTTGCCAGCTCATCACAAAGTTTAGATATGGCTAAGTCTGTTGCTTTAGAGGTTTTTGATGTGTTGAAGACTGCTTTTGGAAATAATCCTCAGAATCTCAAAACTGACAGAGACTACCCAATGGGGTTTTTACAGCTCAATGCAATGCGTCTAGCTGACATATTCTCTGATGATTCAAACTTTCGATCTTACATGACAATTTGTTTTACTAAAGTTCTGGCAGCAATATTTATGCTGTCCCATGGAGATTTTTTGTCCTGTTGGTGCTCGTCTAACCTCCCGGAGAAGGAGGAGGACGCAACTCTTGAATATGATATATTTGCTGCAGTTGGATGGATCTTGGATAATACTTCATCGCAGGATCTATTTAATACATCAAATTTGGAGTTTAACCTTGTCCGTAACAGCATGCCTCAGGCCTCTTACGCACATCATAGGACTTCATTATTTGTTAAAGTCATAGCAAATCTTCATTGTTTTGTTCCCAACATATGTGAAGAGCAGGAGAGGAACTTTTTCGTTCTTAGGGTTTTGGAGTGCTTGCAAATGGATTTAAGTAACTTGCTGCCCGGCTTTACTTTTGCTTCTGATGCTCCTAATGCAACCAGCATCTGCAAGAACCTACGCTCATTGTTAAGTCATGCAGAATCCTTGATCCCAAACTTTTTAAATGTGGAGGATGTGCATCTTTTAAGGGTGTTTTCTGACAAATTAGAGACATTAATTAATTCTTCTGGATTTAGAGCAAATCGTGTTCAAGATAGCAAGGACTTATCTTGTGACAAGTTTTCCAAACTGAACATCAATGAATATCAGGAGGCTAAGAGTCCAGGTGGAGGCTCATCGCCTTTACCTGTAAAAGAACTTGCTGATCTTACGAAGAAGAGTGGTAATTTAAGGGAAGGAATGTCTGAGAATTCTGCATTCTTGGACATAAACCATTTTGATGCCAGAGCTGAAGACATTAATCAAGGTGCTGGCCCAAATCCACAAGATAAGATGGAAGATAAAATTATTTCTGGTAAGACTGCATCAGAAGGTGCAAGAGATGCAGACAAGGATGCCCAAAATGTTGAAACAAGTGGTTCTGATACAAGTTCTGCTAAAGGTAAGAGTGTTATTGATCATATGGACAATGTTGAACTTTCAAAATCAGCCGAGCATCTTAAAAAGGTTGGAGTTGAAGAAAATCCAGAAGATGAGAAGGTTGAAACAAAGCAGAGGAAAAAGCGAAAGCGAACTATAATGAATGATAACCAGGTGATGTTAATTGAGAGGGCCTTGTTGGATGAGCCTGAGATGCAGCGAAATGCGGCTTTACTACTGTCCTGGTCTGAAAAATTAAGTCATCATGGTTCCGAAGTGACACCTTCACAGCTTAAAAATTGGCTGAATAATCGAAAAGCTAGGCTAGCCCGCACTGCTAGGGATGTTCGAGCGGCAGTAGATGTCGACACTTCAGTCCCCGACAAGCAAAAGGGGCTGGTACAGGGCTCCTATGACTCCCCTGATAGCCCAAGTGATGCATCAAATGCAAGAAAAGAACTTCCAGGTCACTCTAATATTAGTTCTGGTCAAAAGCCTGATTGTTTGATGGCTGAGTTTGTTGATCTTGGGCATCCAGAAGCTGGGTGCAAGACAGGTCAGTATGTCGTGCTTGTCGATAAGCAAGGAGAGGAAATTGCCAAAGGGAAAGTGTTTCAGGTTAGTGGCAAGTGGTGTGGGAAGAGTTTGGAGGAATTAGAGACATGTGTTGTGGATATCTGTGAGCTTAAAGCTGACAAAGGTTCGCGGCTACCTTACCCGTTGGAAGCCACCGGCTCCTCCTTTGCAGAGGCTGAAATCAAGTTAGGTGTCATGAGAGTGTTATGGGATGCAAATAGAATTTTCGTGTTGAGAGGCGGATATATAAGGCGCTCTTTCTCCCTTACTGAAAACCCTAGAGCTGGCCAGTACCTCTGCTTCTCAAGCGCAGTTTCTGATGTCAGTGATAAGAAGACTGACCCAAAGGTACAGGCCTTGAAGACTGCTAAGGCAGTAAAATCAGGCCCCACTTTCAAGAAGGCCAAGAAAATTAGAACATCAGTCACATTCCATCGACCCAAGACATTGAAAAAGGACAGAAACCCCAAGTACCCTCGTATCAGTGCTCCAGGAAGAAATAAGCTTGATCATTATCAAATTCTGAAGTATCCTCTCACCACTGAGTCAGCAATGAAGAAGATTGAAGACAACAACACTTTGGTTTTCATTGTTGACTTGCGTGCAGACAAGAAGAAGATAAAGCATGCTGTGAAGAAGATGTATGACATTCAGGCCAAGAAAGTAAACACTTTGATTAGGCCCGACGGTACCAAGAAGGCCTATGTGAGGTTGACACCCGATTATGATGCCTTGGATGTCGCAAACAAGATTGGAATCATCTAA 3357 0.4164 MRLSKEDPSSSDAQAVDLISAVKELHGLSSQELNRLLRDSENFTIHYLTRKGSTSKIDMEKLAGSLPLHLIAVLMSSDRDESMMRYVLCGIRLLHSLCDLSPRHPKLEQIFLDDVKVLEQLIDLVFYVIVVLGGYRQEGHTFSLKHLLHSALVGCSLHLLTGFISTQWQDIVHVLLAHPKVDIFMDMAFGSVRMVVRFLEITLSAYHEGDFMEPNLTAERVVYFLTQQCEASLQFLQSLCQQKLFKERLLKNKELCGKGSILFLIRSILKLNIQPYFPIRIMAALSRLKSKILSLLLSLCEAENASYLDEVASSSQSLDMAKSVALEVFDVLKTAFGNNPQNLKTDRDYPMGFLQLNAMRLADIFSDDSNFRSYMTICFTKVLAAIFMLSHGDFLSCWCSSNLPEKEEDATLEYDIFAAVGWILDNTSSQDLFNTSNLEFNLVRNSMPQASYAHHRTSLFVKVIANLHCFVPNICEEQERNFFVLRVLECLQMDLSNLLPGFTFASDAPNATSICKNLRSLLSHAESLIPNFLNVEDVHLLRVFSDKLETLINSSGFRANRVQDSKDLSCDKFSKLNINEYQEAKSPGGGSSPLPVKELADLTKKSGNLREGMSENSAFLDINHFDARAEDINQGAGPNPQDKMEDKIISGKTASEGARDADKDAQNVETSGSDTSSAKGKSVIDHMDNVELSKSAEHLKKVGVEENPEDEKVETKQRKKRKRTIMNDNQVMLIERALLDEPEMQRNAALLLSWSEKLSHHGSEVTPSQLKNWLNNRKARLARTARDVRAAVDVDTSVPDKQKGLVQGSYDSPDSPSDASNARKELPGHSNISSGQKPDCLMAEFVDLGHPEAGCKTGQYVVLVDKQGEEIAKGKVFQVSGKWCGKSLEELETCVVDICELKADKGSRLPYPLEATGSSFAEAEIKLGVMRVLWDANRIFVLRGGYIRRSFSLTENPRAGQYLCFSSAVSDVSDKKTDPKVQALKTAKAVKSGPTFKKAKKIRTSVTFHRPKTLKKDRNPKYPRISAPGRNKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDLRADKKKIKHAVKKMYDIQAKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 1118
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele12g0092 1118 Pfam Ribosomal protein L23, N-terminal domain 980 1028 IPR005633 -
Lele12g0092 1118 CDD homeodomain 720 784 IPR001356 GO:0003677
Lele12g0092 1118 ProSiteProfiles 'Homeobox' domain profile. 717 784 IPR001356 GO:0003677
Lele12g0092 1118 MobiDBLite consensus disorder prediction 668 682 - -
Lele12g0092 1118 PANTHER NODULIN HOMEOBOX 1 943 IPR039325 GO:0003697|GO:0009908
Lele12g0092 1118 Pfam Ribosomal protein L23 1038 1099 IPR013025 GO:0003735|GO:0005840|GO:0006412
Lele12g0092 1118 ProSitePatterns Ribosomal protein L23 signature. 1096 1111 IPR001014 GO:0019843
Lele12g0092 1118 MobiDBLite consensus disorder prediction 684 717 - -
Lele12g0092 1118 Hamap 50S ribosomal protein L23 [rplW]. 1038 1118 IPR013025 GO:0003735|GO:0005840|GO:0006412
Lele12g0092 1118 MobiDBLite consensus disorder prediction 652 724 - -
Lele12g0092 1118 Gene3D - 999 1118 IPR012677 -
Lele12g0092 1118 FunFam 60S ribosomal protein L23a 999 1118 - -
Lele12g0092 1118 SMART HOX_1 719 788 IPR001356 GO:0003677
Lele12g0092 1118 MobiDBLite consensus disorder prediction 652 667 - -
Lele12g0092 1118 SUPERFAMILY Ribosomal proteins S24e, L23 and L15e 1035 1111 IPR012678 GO:0003735|GO:0005840|GO:0006412
Lele12g0092 1118 MobiDBLite consensus disorder prediction 793 835 - -
Lele12g0092 1118 MobiDBLite consensus disorder prediction 808 835 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele12g0092 Lele-ChrLele12 758025 768389 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele12g0092 1001 1118 Cytoplasmic Ribosomal Protein Gene Family AT3G55280 90.678 1.88e-59 198
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele12g0092 12 758025 768389 Lele30g1240 30 15078855 15079867 CCT
Lele12g0092 12 758025 768389 Lele31g1383 31 19640597 19641591 CCT
Lele12g0092 12 758025 768389 Lele32g0157 32 899214 900225 CCT